Strain Fitness in Shewanella loihica PV-4 around Shew_3795
Experiment: Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
4,513,521 | + | Shew_3793 | 0.77 | -0.2 | |
4,513,529 | - | Shew_3793 | 0.77 | -0.0 | |
4,513,813 | + | +0.1 | |||
4,513,842 | + | +0.3 | |||
4,513,873 | + | +0.0 | |||
4,513,873 | - | +0.4 | |||
4,514,312 | + | -0.0 | |||
4,514,332 | + | +0.1 | |||
4,514,443 | + | Shew_3795 | 0.26 | +0.1 | |
4,514,451 | + | Shew_3795 | 0.28 | -0.3 | |
4,514,476 | + | Shew_3795 | 0.34 | -0.8 | |
4,514,623 | + | Shew_3795 | 0.68 | -0.8 | |
4,514,934 | + | -0.8 | |||
4,514,998 | - | -0.1 | |||
4,515,198 | + | Shew_3796 | 0.11 | +0.0 | |
4,515,222 | + | Shew_3796 | 0.12 | +0.0 | |
4,515,260 | + | Shew_3796 | 0.13 | +0.3 | |
4,515,337 | - | Shew_3796 | 0.15 | +0.1 | |
4,515,559 | - | Shew_3796 | 0.23 | +0.0 |
Or see this region's nucleotide sequence