Strain Fitness in Shewanella loihica PV-4 around Shew_2427

Experiment: Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfadI and Shew_2427 are separated by 408 nucleotidesShew_2427 and Shew_2428 overlap by 1 nucleotidesShew_2428 and Shew_2429 are separated by 0 nucleotides Shew_2426: fadI - 3-ketoacyl-CoA thiolase (RefSeq), at 2,851,454 to 2,852,764 fadI Shew_2427: Shew_2427 - ATPase (RefSeq), at 2,853,173 to 2,854,129 _2427 Shew_2428: Shew_2428 - hypothetical protein (RefSeq), at 2,854,129 to 2,855,058 _2428 Shew_2429: Shew_2429 - hypothetical protein (RefSeq), at 2,855,059 to 2,855,553 _2429 Position (kb) 2853 2854 2855Strain fitness (log2 ratio) -1 0 1at 2852.494 kb on - strand, within fadIat 2852.827 kb on + strandat 2852.872 kb on - strandat 2853.398 kb on - strand, within Shew_2427at 2853.646 kb on + strand, within Shew_2427at 2853.752 kb on - strand, within Shew_2427at 2854.742 kb on - strand, within Shew_2428at 2854.911 kb on - strand, within Shew_2428at 2855.116 kb on - strand, within Shew_2429

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 1 mM
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2,852,494 - fadI Shew_2426 0.79 +0.3
2,852,827 + -0.1
2,852,872 - +0.0
2,853,398 - Shew_2427 0.24 -0.7
2,853,646 + Shew_2427 0.49 -1.2
2,853,752 - Shew_2427 0.61 -0.9
2,854,742 - Shew_2428 0.66 -0.0
2,854,911 - Shew_2428 0.84 -1.1
2,855,116 - Shew_2429 0.12 -1.1

Or see this region's nucleotide sequence