Strain Fitness in Shewanella loihica PV-4 around Shew_2040

Experiment: Aluminum chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2039 and Shew_2040 are separated by 154 nucleotidesShew_2040 and Shew_2041 are separated by 134 nucleotides Shew_2039: Shew_2039 - GCN5-related N-acetyltransferase (RefSeq), at 2,351,567 to 2,354,269 _2039 Shew_2040: Shew_2040 - diguanylate cyclase (RefSeq), at 2,354,424 to 2,355,467 _2040 Shew_2041: Shew_2041 - hypothetical protein (RefSeq), at 2,355,602 to 2,357,230 _2041 Position (kb) 2354 2355 2356Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2353.705 kb on + strand, within Shew_2039at 2353.713 kb on - strand, within Shew_2039at 2353.737 kb on + strand, within Shew_2039at 2353.737 kb on + strand, within Shew_2039at 2354.664 kb on + strand, within Shew_2040at 2355.244 kb on + strand, within Shew_2040at 2355.859 kb on - strand, within Shew_2041at 2356.181 kb on + strand, within Shew_2041at 2356.330 kb on - strand, within Shew_2041

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 1 mM
remove
2,353,705 + Shew_2039 0.79 -0.1
2,353,713 - Shew_2039 0.79 +0.4
2,353,737 + Shew_2039 0.80 -0.1
2,353,737 + Shew_2039 0.80 +0.1
2,354,664 + Shew_2040 0.23 +0.5
2,355,244 + Shew_2040 0.79 -0.1
2,355,859 - Shew_2041 0.16 -4.5
2,356,181 + Shew_2041 0.36 -3.1
2,356,330 - Shew_2041 0.45 -3.7

Or see this region's nucleotide sequence