Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0564

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0563 and Dshi_0564 are separated by 103 nucleotidesDshi_0564 and Dshi_0565 overlap by 4 nucleotides Dshi_0563: Dshi_0563 - lipoprotein, putative (RefSeq), at 550,566 to 551,828 _0563 Dshi_0564: Dshi_0564 - protein of unknown function DUF1111 (RefSeq), at 551,932 to 553,464 _0564 Dshi_0565: Dshi_0565 - hypothetical protein (RefSeq), at 553,461 to 554,477 _0565 Position (kb) 551 552 553 554Strain fitness (log2 ratio) -2 -1 0 1 2at 550.945 kb on + strand, within Dshi_0563at 550.979 kb on + strand, within Dshi_0563at 550.991 kb on + strand, within Dshi_0563at 550.991 kb on + strand, within Dshi_0563at 551.014 kb on - strand, within Dshi_0563at 551.059 kb on - strand, within Dshi_0563at 551.109 kb on + strand, within Dshi_0563at 551.133 kb on - strand, within Dshi_0563at 551.144 kb on + strand, within Dshi_0563at 551.144 kb on + strand, within Dshi_0563at 551.144 kb on + strand, within Dshi_0563at 551.152 kb on - strand, within Dshi_0563at 551.252 kb on + strand, within Dshi_0563at 551.254 kb on - strand, within Dshi_0563at 551.288 kb on + strand, within Dshi_0563at 551.320 kb on - strand, within Dshi_0563at 551.320 kb on - strand, within Dshi_0563at 551.365 kb on + strand, within Dshi_0563at 551.384 kb on + strand, within Dshi_0563at 551.397 kb on - strand, within Dshi_0563at 551.412 kb on - strand, within Dshi_0563at 551.472 kb on - strand, within Dshi_0563at 551.501 kb on - strand, within Dshi_0563at 551.519 kb on + strand, within Dshi_0563at 551.527 kb on - strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.621 kb on + strand, within Dshi_0563at 551.629 kb on - strand, within Dshi_0563at 551.629 kb on - strand, within Dshi_0563at 551.655 kb on + strand, within Dshi_0563at 551.691 kb on + strand, within Dshi_0563at 551.699 kb on - strand, within Dshi_0563at 551.699 kb on - strand, within Dshi_0563at 551.699 kb on - strand, within Dshi_0563at 551.728 kb on + strandat 551.747 kb on + strandat 551.797 kb on - strandat 551.825 kb on - strandat 551.879 kb on - strandat 551.889 kb on - strandat 551.906 kb on + strandat 551.940 kb on - strandat 551.943 kb on + strandat 551.958 kb on + strandat 552.005 kb on + strandat 552.047 kb on - strandat 552.047 kb on - strandat 552.047 kb on - strandat 552.170 kb on + strand, within Dshi_0564at 552.227 kb on + strand, within Dshi_0564at 552.247 kb on - strand, within Dshi_0564at 552.253 kb on - strand, within Dshi_0564at 552.266 kb on + strand, within Dshi_0564at 552.266 kb on + strand, within Dshi_0564at 552.349 kb on - strand, within Dshi_0564at 552.349 kb on - strand, within Dshi_0564at 552.364 kb on + strand, within Dshi_0564at 552.438 kb on - strand, within Dshi_0564at 552.476 kb on + strand, within Dshi_0564at 552.499 kb on + strand, within Dshi_0564at 552.499 kb on + strand, within Dshi_0564at 552.499 kb on + strand, within Dshi_0564at 552.507 kb on - strand, within Dshi_0564at 552.514 kb on + strand, within Dshi_0564at 552.532 kb on - strand, within Dshi_0564at 552.534 kb on + strand, within Dshi_0564at 552.534 kb on + strand, within Dshi_0564at 552.542 kb on - strand, within Dshi_0564at 552.547 kb on - strand, within Dshi_0564at 552.577 kb on - strand, within Dshi_0564at 552.577 kb on - strand, within Dshi_0564at 552.594 kb on + strand, within Dshi_0564at 552.594 kb on + strand, within Dshi_0564at 552.712 kb on + strand, within Dshi_0564at 552.712 kb on + strand, within Dshi_0564at 552.736 kb on + strand, within Dshi_0564at 552.765 kb on + strand, within Dshi_0564at 552.796 kb on - strand, within Dshi_0564at 552.796 kb on - strand, within Dshi_0564at 552.798 kb on + strand, within Dshi_0564at 552.806 kb on - strand, within Dshi_0564at 552.806 kb on - strand, within Dshi_0564at 552.905 kb on - strand, within Dshi_0564at 552.918 kb on + strand, within Dshi_0564at 552.918 kb on + strand, within Dshi_0564at 552.926 kb on - strand, within Dshi_0564at 552.935 kb on - strand, within Dshi_0564at 553.006 kb on - strand, within Dshi_0564at 553.050 kb on - strand, within Dshi_0564at 553.061 kb on + strand, within Dshi_0564at 553.069 kb on + strand, within Dshi_0564at 553.069 kb on - strand, within Dshi_0564at 553.069 kb on - strand, within Dshi_0564at 553.069 kb on - strand, within Dshi_0564at 553.167 kb on - strand, within Dshi_0564at 553.216 kb on - strand, within Dshi_0564at 553.222 kb on - strand, within Dshi_0564at 553.286 kb on + strand, within Dshi_0564at 553.313 kb on + strandat 553.353 kb on + strandat 553.392 kb on - strandat 553.392 kb on - strandat 553.416 kb on + strandat 553.417 kb on - strandat 553.420 kb on + strandat 553.427 kb on + strandat 553.474 kb on - strandat 553.480 kb on - strandat 553.503 kb on + strandat 553.555 kb on + strandat 553.560 kb on + strandat 553.560 kb on + strandat 553.563 kb on - strand, within Dshi_0565at 553.567 kb on - strand, within Dshi_0565at 553.617 kb on + strand, within Dshi_0565at 553.617 kb on + strand, within Dshi_0565at 553.617 kb on + strand, within Dshi_0565at 553.620 kb on + strand, within Dshi_0565at 553.625 kb on - strand, within Dshi_0565at 553.628 kb on - strand, within Dshi_0565at 553.690 kb on - strand, within Dshi_0565at 553.719 kb on + strand, within Dshi_0565at 553.745 kb on - strand, within Dshi_0565at 553.759 kb on + strand, within Dshi_0565at 553.773 kb on - strand, within Dshi_0565at 553.773 kb on - strand, within Dshi_0565at 553.773 kb on - strand, within Dshi_0565at 553.842 kb on - strand, within Dshi_0565at 553.842 kb on - strand, within Dshi_0565at 553.862 kb on - strand, within Dshi_0565at 553.886 kb on - strand, within Dshi_0565at 553.898 kb on + strand, within Dshi_0565at 553.898 kb on + strand, within Dshi_0565at 553.899 kb on - strand, within Dshi_0565at 553.901 kb on + strand, within Dshi_0565at 553.906 kb on - strand, within Dshi_0565at 554.010 kb on + strand, within Dshi_0565at 554.010 kb on + strand, within Dshi_0565at 554.013 kb on - strand, within Dshi_0565at 554.018 kb on - strand, within Dshi_0565at 554.021 kb on - strand, within Dshi_0565at 554.062 kb on - strand, within Dshi_0565at 554.150 kb on + strand, within Dshi_0565at 554.164 kb on + strand, within Dshi_0565at 554.230 kb on - strand, within Dshi_0565at 554.339 kb on - strand, within Dshi_0565at 554.371 kb on - strand, within Dshi_0565at 554.442 kb on + strandat 554.449 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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550,945 + Dshi_0563 0.30 -0.4
550,979 + Dshi_0563 0.33 -0.7
550,991 + Dshi_0563 0.34 -0.6
550,991 + Dshi_0563 0.34 -0.4
551,014 - Dshi_0563 0.35 -0.2
551,059 - Dshi_0563 0.39 -0.0
551,109 + Dshi_0563 0.43 +0.7
551,133 - Dshi_0563 0.45 +0.5
551,144 + Dshi_0563 0.46 +0.4
551,144 + Dshi_0563 0.46 -0.7
551,144 + Dshi_0563 0.46 +0.4
551,152 - Dshi_0563 0.46 -0.5
551,252 + Dshi_0563 0.54 -0.6
551,254 - Dshi_0563 0.54 -0.1
551,288 + Dshi_0563 0.57 +0.2
551,320 - Dshi_0563 0.60 -0.3
551,320 - Dshi_0563 0.60 +0.4
551,365 + Dshi_0563 0.63 +0.1
551,384 + Dshi_0563 0.65 +0.4
551,397 - Dshi_0563 0.66 -0.3
551,412 - Dshi_0563 0.67 -0.4
551,472 - Dshi_0563 0.72 -0.6
551,501 - Dshi_0563 0.74 -0.2
551,519 + Dshi_0563 0.75 -0.2
551,527 - Dshi_0563 0.76 -0.6
551,621 + Dshi_0563 0.84 +2.3
551,621 + Dshi_0563 0.84 -0.4
551,621 + Dshi_0563 0.84 +0.8
551,621 + Dshi_0563 0.84 +0.1
551,621 + Dshi_0563 0.84 -1.1
551,621 + Dshi_0563 0.84 -1.5
551,621 + Dshi_0563 0.84 -0.4
551,629 - Dshi_0563 0.84 -0.3
551,629 - Dshi_0563 0.84 -0.2
551,655 + Dshi_0563 0.86 +1.0
551,691 + Dshi_0563 0.89 -0.3
551,699 - Dshi_0563 0.90 -0.5
551,699 - Dshi_0563 0.90 -0.5
551,699 - Dshi_0563 0.90 -0.4
551,728 + +0.0
551,747 + -2.3
551,797 - +0.7
551,825 - -0.3
551,879 - +0.2
551,889 - -0.3
551,906 + -1.3
551,940 - -0.2
551,943 + -0.9
551,958 + -0.8
552,005 + -0.5
552,047 - +0.0
552,047 - +0.4
552,047 - -0.7
552,170 + Dshi_0564 0.16 -0.3
552,227 + Dshi_0564 0.19 -0.3
552,247 - Dshi_0564 0.21 -0.7
552,253 - Dshi_0564 0.21 -0.3
552,266 + Dshi_0564 0.22 -0.2
552,266 + Dshi_0564 0.22 -0.3
552,349 - Dshi_0564 0.27 +0.0
552,349 - Dshi_0564 0.27 +1.7
552,364 + Dshi_0564 0.28 -0.5
552,438 - Dshi_0564 0.33 +0.3
552,476 + Dshi_0564 0.35 -0.8
552,499 + Dshi_0564 0.37 -1.3
552,499 + Dshi_0564 0.37 +0.0
552,499 + Dshi_0564 0.37 -0.1
552,507 - Dshi_0564 0.38 -0.1
552,514 + Dshi_0564 0.38 +0.1
552,532 - Dshi_0564 0.39 -0.7
552,534 + Dshi_0564 0.39 -0.3
552,534 + Dshi_0564 0.39 -1.0
552,542 - Dshi_0564 0.40 -0.2
552,547 - Dshi_0564 0.40 -0.5
552,577 - Dshi_0564 0.42 -2.0
552,577 - Dshi_0564 0.42 -0.3
552,594 + Dshi_0564 0.43 +1.0
552,594 + Dshi_0564 0.43 +0.3
552,712 + Dshi_0564 0.51 -1.8
552,712 + Dshi_0564 0.51 -0.9
552,736 + Dshi_0564 0.52 +1.3
552,765 + Dshi_0564 0.54 +0.0
552,796 - Dshi_0564 0.56 +0.3
552,796 - Dshi_0564 0.56 -0.1
552,798 + Dshi_0564 0.56 -0.6
552,806 - Dshi_0564 0.57 -1.7
552,806 - Dshi_0564 0.57 +0.0
552,905 - Dshi_0564 0.63 -2.2
552,918 + Dshi_0564 0.64 -2.2
552,918 + Dshi_0564 0.64 -0.1
552,926 - Dshi_0564 0.65 -0.2
552,935 - Dshi_0564 0.65 -0.6
553,006 - Dshi_0564 0.70 -0.0
553,050 - Dshi_0564 0.73 +2.3
553,061 + Dshi_0564 0.74 -0.5
553,069 + Dshi_0564 0.74 -0.1
553,069 - Dshi_0564 0.74 -0.8
553,069 - Dshi_0564 0.74 -1.7
553,069 - Dshi_0564 0.74 +0.4
553,167 - Dshi_0564 0.81 -1.3
553,216 - Dshi_0564 0.84 -1.3
553,222 - Dshi_0564 0.84 -0.3
553,286 + Dshi_0564 0.88 -0.4
553,313 + -0.3
553,353 + -0.3
553,392 - +0.4
553,392 - -0.7
553,416 + -0.3
553,417 - -0.1
553,420 + +0.5
553,427 + -1.1
553,474 - -0.9
553,480 - -1.4
553,503 + +0.4
553,555 + -1.0
553,560 + +0.4
553,560 + -0.9
553,563 - Dshi_0565 0.10 +0.7
553,567 - Dshi_0565 0.10 +0.7
553,617 + Dshi_0565 0.15 -0.2
553,617 + Dshi_0565 0.15 -0.4
553,617 + Dshi_0565 0.15 +0.3
553,620 + Dshi_0565 0.16 -0.5
553,625 - Dshi_0565 0.16 -0.7
553,628 - Dshi_0565 0.16 -0.4
553,690 - Dshi_0565 0.23 -0.1
553,719 + Dshi_0565 0.25 -1.0
553,745 - Dshi_0565 0.28 +0.0
553,759 + Dshi_0565 0.29 -0.4
553,773 - Dshi_0565 0.31 +0.7
553,773 - Dshi_0565 0.31 +0.8
553,773 - Dshi_0565 0.31 +0.8
553,842 - Dshi_0565 0.37 -0.1
553,842 - Dshi_0565 0.37 -0.2
553,862 - Dshi_0565 0.39 +0.1
553,886 - Dshi_0565 0.42 -1.1
553,898 + Dshi_0565 0.43 -1.3
553,898 + Dshi_0565 0.43 +0.6
553,899 - Dshi_0565 0.43 +1.1
553,901 + Dshi_0565 0.43 -1.0
553,906 - Dshi_0565 0.44 +1.0
554,010 + Dshi_0565 0.54 -0.2
554,010 + Dshi_0565 0.54 +0.1
554,013 - Dshi_0565 0.54 -0.2
554,018 - Dshi_0565 0.55 -0.1
554,021 - Dshi_0565 0.55 -0.7
554,062 - Dshi_0565 0.59 -0.1
554,150 + Dshi_0565 0.68 -0.6
554,164 + Dshi_0565 0.69 -0.5
554,230 - Dshi_0565 0.76 -0.4
554,339 - Dshi_0565 0.86 -0.0
554,371 - Dshi_0565 0.89 +0.3
554,442 + -0.4
554,449 - -0.1

Or see this region's nucleotide sequence