Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0315 and Dshi_0316 overlap by 4 nucleotides Dshi_0316 and Dshi_0317 overlap by 4 nucleotides Dshi_0317 and Dshi_0318 are separated by 349 nucleotides
Dshi_0315: Dshi_0315 - pseudouridine synthase, RluA family (RefSeq), at 303,518 to 304,564
_0315
Dshi_0316: Dshi_0316 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 304,561 to 305,241
_0316
Dshi_0317: Dshi_0317 - ATP12 ATPase (RefSeq), at 305,238 to 305,942
_0317
Dshi_0318: Dshi_0318 - cationic amino acid ABC transporter, periplasmic binding protein (RefSeq), at 306,292 to 307,308
_0318
Position (kb) 305
306 Strain fitness (log2 ratio) -1
0
1
2
3 at 304.500 kb on + strand at 304.508 kb on - strand at 304.513 kb on + strand at 304.676 kb on - strand, within Dshi_0316 at 304.712 kb on - strand, within Dshi_0316 at 304.814 kb on + strand, within Dshi_0316 at 304.898 kb on - strand, within Dshi_0316 at 304.921 kb on + strand, within Dshi_0316 at 305.017 kb on - strand, within Dshi_0316 at 305.025 kb on + strand, within Dshi_0316 at 305.033 kb on - strand, within Dshi_0316 at 305.033 kb on - strand, within Dshi_0316 at 305.111 kb on + strand, within Dshi_0316 at 305.149 kb on - strand, within Dshi_0316 at 305.150 kb on + strand, within Dshi_0316 at 305.176 kb on + strand at 305.936 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 306.024 kb on - strand at 306.034 kb on - strand at 306.046 kb on - strand at 306.075 kb on + strand at 306.075 kb on + strand at 306.123 kb on + strand at 306.140 kb on - strand at 306.152 kb on - strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.217 kb on - strand at 306.220 kb on - strand at 306.221 kb on + strand at 306.265 kb on - strand at 306.273 kb on + strand at 306.281 kb on - strand at 306.281 kb on - strand at 306.293 kb on - strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.363 kb on - strand at 306.373 kb on + strand at 306.381 kb on - strand at 306.381 kb on - strand at 306.388 kb on + strand at 306.388 kb on + strand at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.402 kb on + strand, within Dshi_0318 at 306.407 kb on + strand, within Dshi_0318 at 306.458 kb on + strand, within Dshi_0318 at 306.466 kb on - strand, within Dshi_0318 at 306.469 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.521 kb on + strand, within Dshi_0318 at 306.538 kb on + strand, within Dshi_0318 at 306.541 kb on - strand, within Dshi_0318 at 306.546 kb on - strand, within Dshi_0318 at 306.556 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.668 kb on + strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.727 kb on - strand, within Dshi_0318 at 306.914 kb on + strand, within Dshi_0318 at 306.930 kb on + strand, within Dshi_0318
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 304,500 + +0.2 304,508 - +0.6 304,513 + +0.6 304,676 - Dshi_0316 0.17 +0.6 304,712 - Dshi_0316 0.22 +0.8 304,814 + Dshi_0316 0.37 +0.2 304,898 - Dshi_0316 0.49 +0.5 304,921 + Dshi_0316 0.53 +1.1 305,017 - Dshi_0316 0.67 +0.4 305,025 + Dshi_0316 0.68 +1.4 305,033 - Dshi_0316 0.69 +0.2 305,033 - Dshi_0316 0.69 +0.5 305,111 + Dshi_0316 0.81 +0.5 305,149 - Dshi_0316 0.86 -0.1 305,150 + Dshi_0316 0.86 +0.1 305,176 + -0.3 305,936 + +0.6 305,948 + -0.1 305,948 + +0.5 305,948 + +1.1 305,948 + +0.5 305,948 + +0.5 305,948 + +1.3 305,948 + +0.9 305,948 + +1.3 305,948 + +1.0 305,948 + +0.2 305,948 + +1.2 305,948 + +1.4 305,948 + -0.1 305,948 + +1.0 305,948 + -0.2 305,948 + +1.4 305,948 + +1.3 305,948 + +1.0 305,948 + +1.4 305,948 + +1.5 305,948 + +1.1 305,948 + +1.4 305,948 + +1.0 305,948 + +0.4 305,948 + +0.9 305,948 + +0.6 305,956 - +0.5 305,956 - +0.3 305,956 - +0.7 305,956 - +0.7 305,956 - +1.5 305,956 - +0.7 305,956 - +0.8 305,956 - +0.7 305,956 - +0.5 305,956 - +2.8 305,956 - +0.7 305,956 - +2.8 305,956 - +0.6 305,956 - +0.5 305,956 - +1.3 305,956 - +1.0 305,956 - +1.3 305,956 - +0.7 305,956 - +2.7 305,956 - +1.2 306,024 - +1.1 306,034 - +1.3 306,046 - +0.9 306,075 + +0.9 306,075 + +0.9 306,123 + -1.7 306,140 - +0.8 306,152 - +1.0 306,200 + +0.0 306,200 + +2.0 306,200 + +1.3 306,200 + -0.4 306,200 + +1.8 306,208 - +1.4 306,208 - +1.0 306,208 - +0.8 306,208 - +1.4 306,208 - +1.4 306,217 - +2.1 306,220 - +1.0 306,221 + +0.4 306,265 - +2.5 306,273 + +1.4 306,281 - +1.1 306,281 - +1.3 306,293 - +1.3 306,332 + +1.7 306,332 + +1.0 306,332 + +1.1 306,363 - -0.5 306,373 + +1.0 306,381 - +0.7 306,381 - +2.8 306,388 + +1.8 306,388 + +0.7 306,396 - Dshi_0318 0.10 +1.4 306,396 - Dshi_0318 0.10 +1.6 306,396 - Dshi_0318 0.10 +0.9 306,402 + Dshi_0318 0.11 +1.0 306,407 + Dshi_0318 0.11 +1.0 306,458 + Dshi_0318 0.16 +1.6 306,466 - Dshi_0318 0.17 +1.1 306,469 + Dshi_0318 0.17 +1.4 306,474 + Dshi_0318 0.18 +1.0 306,474 + Dshi_0318 0.18 +1.1 306,507 + Dshi_0318 0.21 +1.3 306,507 + Dshi_0318 0.21 +0.8 306,521 + Dshi_0318 0.23 +2.1 306,538 + Dshi_0318 0.24 +0.7 306,541 - Dshi_0318 0.24 +1.3 306,546 - Dshi_0318 0.25 +1.4 306,556 + Dshi_0318 0.26 +1.3 306,661 + Dshi_0318 0.36 +2.1 306,661 + Dshi_0318 0.36 +1.2 306,668 + Dshi_0318 0.37 +1.6 306,669 - Dshi_0318 0.37 +0.7 306,669 - Dshi_0318 0.37 +1.5 306,727 - Dshi_0318 0.43 +1.3 306,914 + Dshi_0318 0.61 +1.0 306,930 + Dshi_0318 0.63 +1.3
Or see this region's nucleotide sequence