Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06080

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06075 and RALBFv3_RS06080 are separated by 436 nucleotidesRALBFv3_RS06080 and RALBFv3_RS06085 overlap by 8 nucleotides RALBFv3_RS06075: RALBFv3_RS06075 - ribonucleoside-diphosphate reductase subunit alpha, at 1,350,779 to 1,353,742 _RS06075 RALBFv3_RS06080: RALBFv3_RS06080 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 1,354,179 to 1,354,781 _RS06080 RALBFv3_RS06085: RALBFv3_RS06085 - sigma-54-dependent Fis family transcriptional regulator, at 1,354,774 to 1,356,459 _RS06085 Position (kb) 1354 1355Strain fitness (log2 ratio) -1 0 1at 1354.138 kb on - strandat 1354.205 kb on - strandat 1355.091 kb on - strand, within RALBFv3_RS06085at 1355.213 kb on - strand, within RALBFv3_RS06085at 1355.620 kb on + strand, within RALBFv3_RS06085at 1355.620 kb on + strand, within RALBFv3_RS06085at 1355.621 kb on - strand, within RALBFv3_RS06085

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
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1,354,138 - +0.7
1,354,205 - +0.4
1,355,091 - RALBFv3_RS06085 0.19 +1.1
1,355,213 - RALBFv3_RS06085 0.26 +0.4
1,355,620 + RALBFv3_RS06085 0.50 +0.1
1,355,620 + RALBFv3_RS06085 0.50 +0.4
1,355,621 - RALBFv3_RS06085 0.50 +0.2

Or see this region's nucleotide sequence