Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03625 and RALBFv3_RS03630 are separated by 212 nucleotides RALBFv3_RS03630 and RALBFv3_RS03635 are separated by 91 nucleotides RALBFv3_RS03635 and RALBFv3_RS03640 are separated by 107 nucleotides
RALBFv3_RS03625: RALBFv3_RS03625 - sulfurtransferase, at 797,258 to 798,106
_RS03625
RALBFv3_RS03630: RALBFv3_RS03630 - flavodoxin family protein, at 798,319 to 798,891
_RS03630
RALBFv3_RS03635: RALBFv3_RS03635 - pirin family protein, at 798,983 to 799,681
_RS03635
RALBFv3_RS03640: RALBFv3_RS03640 - LysR family transcriptional regulator, at 799,789 to 800,691
_RS03640
Position (kb) 798
799 Strain fitness (log2 ratio) -2
-1
0
1 at 797.666 kb on - strand, within RALBFv3_RS03625 at 797.867 kb on + strand, within RALBFv3_RS03625 at 797.867 kb on + strand, within RALBFv3_RS03625 at 797.868 kb on - strand, within RALBFv3_RS03625 at 797.868 kb on - strand, within RALBFv3_RS03625 at 797.868 kb on - strand, within RALBFv3_RS03625 at 797.868 kb on - strand, within RALBFv3_RS03625 at 797.894 kb on + strand, within RALBFv3_RS03625 at 797.895 kb on - strand, within RALBFv3_RS03625 at 797.921 kb on + strand, within RALBFv3_RS03625 at 797.921 kb on + strand, within RALBFv3_RS03625 at 797.921 kb on + strand, within RALBFv3_RS03625 at 798.047 kb on + strand at 798.047 kb on + strand at 798.048 kb on - strand at 798.048 kb on - strand at 798.048 kb on - strand at 798.467 kb on + strand, within RALBFv3_RS03630 at 798.467 kb on + strand, within RALBFv3_RS03630 at 798.467 kb on + strand, within RALBFv3_RS03630 at 798.468 kb on - strand, within RALBFv3_RS03630 at 798.468 kb on - strand, within RALBFv3_RS03630 at 798.578 kb on + strand, within RALBFv3_RS03630 at 798.578 kb on + strand, within RALBFv3_RS03630 at 798.579 kb on - strand, within RALBFv3_RS03630 at 798.708 kb on - strand, within RALBFv3_RS03630 at 799.084 kb on + strand, within RALBFv3_RS03635 at 799.186 kb on - strand, within RALBFv3_RS03635 at 799.483 kb on - strand, within RALBFv3_RS03635 at 799.596 kb on + strand, within RALBFv3_RS03635 at 799.705 kb on - strand at 799.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 797,666 - RALBFv3_RS03625 0.48 -1.5 797,867 + RALBFv3_RS03625 0.72 -0.6 797,867 + RALBFv3_RS03625 0.72 -0.7 797,868 - RALBFv3_RS03625 0.72 -0.4 797,868 - RALBFv3_RS03625 0.72 -0.4 797,868 - RALBFv3_RS03625 0.72 -0.0 797,868 - RALBFv3_RS03625 0.72 +0.9 797,894 + RALBFv3_RS03625 0.75 +0.1 797,895 - RALBFv3_RS03625 0.75 -2.0 797,921 + RALBFv3_RS03625 0.78 -0.6 797,921 + RALBFv3_RS03625 0.78 +0.4 797,921 + RALBFv3_RS03625 0.78 +0.6 798,047 + -0.3 798,047 + +0.8 798,048 - +1.3 798,048 - +0.5 798,048 - -0.2 798,467 + RALBFv3_RS03630 0.26 -0.1 798,467 + RALBFv3_RS03630 0.26 +0.1 798,467 + RALBFv3_RS03630 0.26 -0.8 798,468 - RALBFv3_RS03630 0.26 +0.4 798,468 - RALBFv3_RS03630 0.26 -2.3 798,578 + RALBFv3_RS03630 0.45 +0.1 798,578 + RALBFv3_RS03630 0.45 -0.8 798,579 - RALBFv3_RS03630 0.45 -0.2 798,708 - RALBFv3_RS03630 0.68 +0.3 799,084 + RALBFv3_RS03635 0.14 -0.3 799,186 - RALBFv3_RS03635 0.29 +0.1 799,483 - RALBFv3_RS03635 0.72 +0.9 799,596 + RALBFv3_RS03635 0.88 +0.7 799,705 - -0.1 799,741 - -0.3
Or see this region's nucleotide sequence