Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03015

Experiment: Iron excess (2.5x) , H2 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03010 and MMJJ_RS03015 are separated by 83 nucleotides MMJJ_RS03010: MMJJ_RS03010 - replication factor C small subunit, at 563,261 to 564,208 _RS03010 MMJJ_RS03015: MMJJ_RS03015 - Ig-like domain-containing protein, at 564,292 to 566,091 _RS03015 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 563.826 kb on + strand, within MMJJ_RS03010at 563.866 kb on + strand, within MMJJ_RS03010at 564.083 kb on + strand, within MMJJ_RS03010at 564.244 kb on - strandat 564.286 kb on + strandat 564.293 kb on - strandat 564.301 kb on - strandat 564.359 kb on + strandat 564.376 kb on - strandat 564.377 kb on + strandat 564.415 kb on + strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.421 kb on - strandat 564.422 kb on + strandat 564.428 kb on - strandat 564.428 kb on - strandat 564.462 kb on - strandat 564.462 kb on - strandat 564.463 kb on + strandat 564.536 kb on - strand, within MMJJ_RS03015at 564.536 kb on - strand, within MMJJ_RS03015at 564.537 kb on + strand, within MMJJ_RS03015at 564.537 kb on + strand, within MMJJ_RS03015at 564.617 kb on + strand, within MMJJ_RS03015at 564.617 kb on + strand, within MMJJ_RS03015at 564.641 kb on - strand, within MMJJ_RS03015at 564.667 kb on - strand, within MMJJ_RS03015at 564.668 kb on + strand, within MMJJ_RS03015at 564.696 kb on - strand, within MMJJ_RS03015at 564.697 kb on + strand, within MMJJ_RS03015at 564.711 kb on - strand, within MMJJ_RS03015at 564.712 kb on + strandat 564.712 kb on + strand, within MMJJ_RS03015at 564.771 kb on - strand, within MMJJ_RS03015at 564.772 kb on + strand, within MMJJ_RS03015at 564.772 kb on + strand, within MMJJ_RS03015at 564.787 kb on - strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.852 kb on + strand, within MMJJ_RS03015at 564.852 kb on + strand, within MMJJ_RS03015at 564.888 kb on + strand, within MMJJ_RS03015at 564.890 kb on - strand, within MMJJ_RS03015at 564.891 kb on + strand, within MMJJ_RS03015at 564.921 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.006 kb on + strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.008 kb on + strand, within MMJJ_RS03015at 565.008 kb on + strand, within MMJJ_RS03015at 565.038 kb on - strand, within MMJJ_RS03015at 565.290 kb on - strand, within MMJJ_RS03015at 565.290 kb on - strand, within MMJJ_RS03015at 565.533 kb on + strand, within MMJJ_RS03015at 565.533 kb on + strand, within MMJJ_RS03015at 565.533 kb on + strand, within MMJJ_RS03015at 565.539 kb on + strand, within MMJJ_RS03015at 565.539 kb on + strand, within MMJJ_RS03015at 565.576 kb on - strand, within MMJJ_RS03015at 565.576 kb on - strandat 565.576 kb on - strand, within MMJJ_RS03015at 565.590 kb on - strand, within MMJJ_RS03015at 565.590 kb on - strand, within MMJJ_RS03015

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Per-strain Table

Position Strand Gene LocusTag Fraction Iron excess (2.5x) , H2 media
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563,826 + MMJJ_RS03010 0.60 -2.5
563,866 + MMJJ_RS03010 0.64 -2.9
564,083 + MMJJ_RS03010 0.87 -0.5
564,244 - -1.9
564,286 + -1.0
564,293 - -1.3
564,301 - -2.2
564,359 + +0.9
564,376 - -0.2
564,377 + +0.2
564,415 + +0.4
564,416 - -1.2
564,416 - -1.2
564,416 - -0.8
564,416 - -1.0
564,416 - -0.9
564,416 - -1.1
564,416 - -0.6
564,416 - +1.7
564,417 + +0.1
564,417 + +0.3
564,417 + -1.4
564,417 + -0.9
564,417 + +1.6
564,417 + +1.4
564,421 - -1.0
564,422 + -1.0
564,428 - -1.6
564,428 - -2.0
564,462 - -0.1
564,462 - -0.4
564,463 + +0.8
564,536 - MMJJ_RS03015 0.14 +0.3
564,536 - MMJJ_RS03015 0.14 +0.3
564,537 + MMJJ_RS03015 0.14 -3.5
564,537 + MMJJ_RS03015 0.14 -0.0
564,617 + MMJJ_RS03015 0.18 +0.0
564,617 + MMJJ_RS03015 0.18 +0.1
564,641 - MMJJ_RS03015 0.19 -2.6
564,667 - MMJJ_RS03015 0.21 -1.1
564,668 + MMJJ_RS03015 0.21 -0.1
564,696 - MMJJ_RS03015 0.22 -0.4
564,697 + MMJJ_RS03015 0.23 -0.2
564,711 - MMJJ_RS03015 0.23 -0.2
564,712 + +4.0
564,712 + MMJJ_RS03015 0.23 +0.8
564,771 - MMJJ_RS03015 0.27 +1.6
564,772 + MMJJ_RS03015 0.27 -0.8
564,772 + MMJJ_RS03015 0.27 -1.6
564,787 - MMJJ_RS03015 0.28 +0.9
564,788 + MMJJ_RS03015 0.28 -0.3
564,788 + MMJJ_RS03015 0.28 -0.1
564,788 + MMJJ_RS03015 0.28 +0.5
564,852 + MMJJ_RS03015 0.31 -0.2
564,852 + MMJJ_RS03015 0.31 -1.7
564,888 + MMJJ_RS03015 0.33 -1.7
564,890 - MMJJ_RS03015 0.33 -2.2
564,891 + MMJJ_RS03015 0.33 -0.2
564,921 - MMJJ_RS03015 0.35 -0.7
565,005 - MMJJ_RS03015 0.40 -2.1
565,005 - MMJJ_RS03015 0.40 -0.2
565,005 - MMJJ_RS03015 0.40 +0.9
565,005 - MMJJ_RS03015 0.40 -1.2
565,006 + MMJJ_RS03015 0.40 -0.0
565,007 - MMJJ_RS03015 0.40 -0.1
565,007 - MMJJ_RS03015 0.40 -0.4
565,007 - MMJJ_RS03015 0.40 -0.3
565,007 - MMJJ_RS03015 0.40 -1.9
565,008 + MMJJ_RS03015 0.40 -2.3
565,008 + MMJJ_RS03015 0.40 -1.6
565,038 - MMJJ_RS03015 0.41 -0.0
565,290 - MMJJ_RS03015 0.55 -0.5
565,290 - MMJJ_RS03015 0.55 +0.1
565,533 + MMJJ_RS03015 0.69 -1.7
565,533 + MMJJ_RS03015 0.69 +1.5
565,533 + MMJJ_RS03015 0.69 -0.6
565,539 + MMJJ_RS03015 0.69 +2.0
565,539 + MMJJ_RS03015 0.69 -0.8
565,576 - MMJJ_RS03015 0.71 +1.0
565,576 - +0.5
565,576 - MMJJ_RS03015 0.71 -0.6
565,590 - MMJJ_RS03015 0.72 -1.2
565,590 - MMJJ_RS03015 0.72 +0.4

Or see this region's nucleotide sequence