Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01430

Experiment: Iron excess (2.5x) , H2 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01425 and MMJJ_RS01430 are separated by 85 nucleotidesMMJJ_RS01430 and MMJJ_RS01435 are separated by 5 nucleotidesMMJJ_RS01435 and MMJJ_RS01440 are separated by 69 nucleotides MMJJ_RS01425: MMJJ_RS01425 - cell wall-binding protein, at 278,189 to 279,145 _RS01425 MMJJ_RS01430: MMJJ_RS01430 - hypothetical protein, at 279,231 to 279,776 _RS01430 MMJJ_RS01435: MMJJ_RS01435 - 4Fe-4S binding protein, at 279,782 to 280,483 _RS01435 MMJJ_RS01440: MMJJ_RS01440 - NCS2 family permease, at 280,553 to 281,854 _RS01440 Position (kb) 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 278.243 kb on - strandat 278.263 kb on + strandat 278.263 kb on + strandat 278.266 kb on + strandat 278.292 kb on - strand, within MMJJ_RS01425at 278.302 kb on - strand, within MMJJ_RS01425at 278.366 kb on + strand, within MMJJ_RS01425at 278.371 kb on + strand, within MMJJ_RS01425at 278.379 kb on - strand, within MMJJ_RS01425at 278.403 kb on - strand, within MMJJ_RS01425at 278.442 kb on + strand, within MMJJ_RS01425at 278.468 kb on + strand, within MMJJ_RS01425at 278.518 kb on - strand, within MMJJ_RS01425at 278.519 kb on + strand, within MMJJ_RS01425at 278.519 kb on + strand, within MMJJ_RS01425at 278.519 kb on + strand, within MMJJ_RS01425at 278.523 kb on - strand, within MMJJ_RS01425at 278.524 kb on + strandat 278.527 kb on - strand, within MMJJ_RS01425at 278.591 kb on + strand, within MMJJ_RS01425at 278.613 kb on - strand, within MMJJ_RS01425at 278.623 kb on + strand, within MMJJ_RS01425at 278.626 kb on + strand, within MMJJ_RS01425at 278.671 kb on - strand, within MMJJ_RS01425at 278.686 kb on - strand, within MMJJ_RS01425at 278.709 kb on + strand, within MMJJ_RS01425at 278.709 kb on + strand, within MMJJ_RS01425at 278.715 kb on + strand, within MMJJ_RS01425at 278.727 kb on - strand, within MMJJ_RS01425at 278.816 kb on + strand, within MMJJ_RS01425at 278.841 kb on - strand, within MMJJ_RS01425at 278.842 kb on + strand, within MMJJ_RS01425at 278.883 kb on + strand, within MMJJ_RS01425at 278.883 kb on + strand, within MMJJ_RS01425at 278.892 kb on - strand, within MMJJ_RS01425at 278.893 kb on + strand, within MMJJ_RS01425at 278.903 kb on - strand, within MMJJ_RS01425at 278.903 kb on - strand, within MMJJ_RS01425at 278.903 kb on - strand, within MMJJ_RS01425at 278.903 kb on - strand, within MMJJ_RS01425at 278.904 kb on + strand, within MMJJ_RS01425at 278.919 kb on + strand, within MMJJ_RS01425at 278.924 kb on - strand, within MMJJ_RS01425at 278.924 kb on - strand, within MMJJ_RS01425at 278.925 kb on + strand, within MMJJ_RS01425at 278.925 kb on + strand, within MMJJ_RS01425at 278.925 kb on + strand, within MMJJ_RS01425at 278.930 kb on - strand, within MMJJ_RS01425at 278.962 kb on + strand, within MMJJ_RS01425at 278.962 kb on + strand, within MMJJ_RS01425at 278.968 kb on - strand, within MMJJ_RS01425at 278.969 kb on + strand, within MMJJ_RS01425at 279.035 kb on + strand, within MMJJ_RS01425at 279.157 kb on - strandat 279.158 kb on + strandat 279.158 kb on + strandat 279.159 kb on - strandat 279.159 kb on - strandat 279.160 kb on + strandat 279.208 kb on + strandat 279.210 kb on - strandat 279.210 kb on - strandat 279.213 kb on - strandat 279.213 kb on - strandat 279.213 kb on - strandat 279.214 kb on + strandat 279.216 kb on - strandat 279.216 kb on - strandat 279.217 kb on + strandat 279.218 kb on - strandat 279.218 kb on - strandat 279.218 kb on - strandat 279.219 kb on + strandat 279.259 kb on - strandat 279.260 kb on + strandat 279.278 kb on + strandat 279.315 kb on + strand, within MMJJ_RS01430at 279.354 kb on - strand, within MMJJ_RS01430at 279.354 kb on - strandat 279.354 kb on - strand, within MMJJ_RS01430at 279.354 kb on - strand, within MMJJ_RS01430at 279.355 kb on + strand, within MMJJ_RS01430at 279.355 kb on + strand, within MMJJ_RS01430at 279.356 kb on - strand, within MMJJ_RS01430at 279.363 kb on + strand, within MMJJ_RS01430at 279.368 kb on - strand, within MMJJ_RS01430at 279.447 kb on - strand, within MMJJ_RS01430at 279.448 kb on + strand, within MMJJ_RS01430at 279.457 kb on - strand, within MMJJ_RS01430at 279.458 kb on + strand, within MMJJ_RS01430at 279.458 kb on + strand, within MMJJ_RS01430at 279.468 kb on - strand, within MMJJ_RS01430at 279.468 kb on - strand, within MMJJ_RS01430at 279.469 kb on + strand, within MMJJ_RS01430at 279.503 kb on - strand, within MMJJ_RS01430at 279.504 kb on + strand, within MMJJ_RS01430at 279.567 kb on + strand, within MMJJ_RS01430at 279.574 kb on - strand, within MMJJ_RS01430at 279.574 kb on - strand, within MMJJ_RS01430at 279.588 kb on + strand, within MMJJ_RS01430at 279.611 kb on + strand, within MMJJ_RS01430at 279.611 kb on + strand, within MMJJ_RS01430at 279.635 kb on + strand, within MMJJ_RS01430at 279.640 kb on + strand, within MMJJ_RS01430at 279.677 kb on + strand, within MMJJ_RS01430at 279.681 kb on + strand, within MMJJ_RS01430at 279.747 kb on + strandat 279.779 kb on - strandat 279.779 kb on - strandat 279.780 kb on + strandat 279.814 kb on + strandat 279.869 kb on + strand, within MMJJ_RS01435at 279.869 kb on + strand, within MMJJ_RS01435at 279.873 kb on - strand, within MMJJ_RS01435at 279.982 kb on - strand, within MMJJ_RS01435at 279.982 kb on - strand, within MMJJ_RS01435at 279.983 kb on + strand, within MMJJ_RS01435at 279.983 kb on + strand, within MMJJ_RS01435at 279.985 kb on + strand, within MMJJ_RS01435at 280.016 kb on - strand, within MMJJ_RS01435at 280.017 kb on + strand, within MMJJ_RS01435at 280.018 kb on - strand, within MMJJ_RS01435at 280.019 kb on + strand, within MMJJ_RS01435at 280.035 kb on - strand, within MMJJ_RS01435at 280.040 kb on + strand, within MMJJ_RS01435at 280.040 kb on + strand, within MMJJ_RS01435at 280.063 kb on + strand, within MMJJ_RS01435at 280.063 kb on + strand, within MMJJ_RS01435at 280.091 kb on - strand, within MMJJ_RS01435at 280.091 kb on - strand, within MMJJ_RS01435at 280.095 kb on - strand, within MMJJ_RS01435at 280.100 kb on - strand, within MMJJ_RS01435at 280.101 kb on + strandat 280.124 kb on - strand, within MMJJ_RS01435at 280.125 kb on + strand, within MMJJ_RS01435at 280.125 kb on + strand, within MMJJ_RS01435at 280.148 kb on - strand, within MMJJ_RS01435at 280.148 kb on - strandat 280.148 kb on - strand, within MMJJ_RS01435at 280.148 kb on - strand, within MMJJ_RS01435at 280.149 kb on + strand, within MMJJ_RS01435at 280.149 kb on + strand, within MMJJ_RS01435at 280.149 kb on + strand, within MMJJ_RS01435at 280.149 kb on + strand, within MMJJ_RS01435at 280.152 kb on - strand, within MMJJ_RS01435at 280.153 kb on + strand, within MMJJ_RS01435at 280.164 kb on - strand, within MMJJ_RS01435at 280.164 kb on - strand, within MMJJ_RS01435at 280.165 kb on + strand, within MMJJ_RS01435at 280.165 kb on + strand, within MMJJ_RS01435at 280.213 kb on - strand, within MMJJ_RS01435at 280.213 kb on - strand, within MMJJ_RS01435at 280.213 kb on - strand, within MMJJ_RS01435at 280.213 kb on - strand, within MMJJ_RS01435at 280.214 kb on + strand, within MMJJ_RS01435at 280.214 kb on + strand, within MMJJ_RS01435at 280.214 kb on + strand, within MMJJ_RS01435at 280.214 kb on + strand, within MMJJ_RS01435at 280.215 kb on - strand, within MMJJ_RS01435at 280.215 kb on - strand, within MMJJ_RS01435at 280.215 kb on - strand, within MMJJ_RS01435at 280.216 kb on + strand, within MMJJ_RS01435at 280.216 kb on + strand, within MMJJ_RS01435at 280.221 kb on - strand, within MMJJ_RS01435at 280.221 kb on - strand, within MMJJ_RS01435at 280.245 kb on + strand, within MMJJ_RS01435at 280.272 kb on + strand, within MMJJ_RS01435at 280.305 kb on - strand, within MMJJ_RS01435at 280.342 kb on - strand, within MMJJ_RS01435at 280.343 kb on + strand, within MMJJ_RS01435at 280.343 kb on + strand, within MMJJ_RS01435at 280.349 kb on + strand, within MMJJ_RS01435at 280.391 kb on + strand, within MMJJ_RS01435at 280.393 kb on - strand, within MMJJ_RS01435at 280.394 kb on + strand, within MMJJ_RS01435at 280.394 kb on + strand, within MMJJ_RS01435at 280.395 kb on - strand, within MMJJ_RS01435at 280.396 kb on + strand, within MMJJ_RS01435at 280.424 kb on + strandat 280.467 kb on - strandat 280.468 kb on + strandat 280.473 kb on + strandat 280.473 kb on + strandat 280.503 kb on + strandat 280.513 kb on - strandat 280.517 kb on - strandat 280.518 kb on + strandat 280.536 kb on + strandat 280.599 kb on - strandat 280.599 kb on - strandat 280.614 kb on + strandat 280.667 kb on - strandat 280.668 kb on + strandat 280.692 kb on - strand, within MMJJ_RS01440at 280.692 kb on - strand, within MMJJ_RS01440at 280.693 kb on + strand, within MMJJ_RS01440at 280.693 kb on + strand, within MMJJ_RS01440at 280.712 kb on - strand, within MMJJ_RS01440at 280.712 kb on - strand, within MMJJ_RS01440at 280.720 kb on - strand, within MMJJ_RS01440at 280.720 kb on - strand, within MMJJ_RS01440at 280.720 kb on - strand, within MMJJ_RS01440

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Per-strain Table

Position Strand Gene LocusTag Fraction Iron excess (2.5x) , H2 media
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278,243 - -0.3
278,263 + -0.2
278,263 + -1.3
278,266 + -0.1
278,292 - MMJJ_RS01425 0.11 +0.1
278,302 - MMJJ_RS01425 0.12 +1.1
278,366 + MMJJ_RS01425 0.18 -1.1
278,371 + MMJJ_RS01425 0.19 +0.4
278,379 - MMJJ_RS01425 0.20 +0.3
278,403 - MMJJ_RS01425 0.22 +0.6
278,442 + MMJJ_RS01425 0.26 -1.1
278,468 + MMJJ_RS01425 0.29 +2.0
278,518 - MMJJ_RS01425 0.34 -0.1
278,519 + MMJJ_RS01425 0.34 +0.1
278,519 + MMJJ_RS01425 0.34 -0.5
278,519 + MMJJ_RS01425 0.34 -1.2
278,523 - MMJJ_RS01425 0.35 -0.1
278,524 + +0.1
278,527 - MMJJ_RS01425 0.35 +0.1
278,591 + MMJJ_RS01425 0.42 -0.6
278,613 - MMJJ_RS01425 0.44 +0.2
278,623 + MMJJ_RS01425 0.45 +0.2
278,626 + MMJJ_RS01425 0.46 -0.2
278,671 - MMJJ_RS01425 0.50 -0.9
278,686 - MMJJ_RS01425 0.52 +0.9
278,709 + MMJJ_RS01425 0.54 -1.2
278,709 + MMJJ_RS01425 0.54 -2.0
278,715 + MMJJ_RS01425 0.55 -1.4
278,727 - MMJJ_RS01425 0.56 -0.7
278,816 + MMJJ_RS01425 0.66 +0.5
278,841 - MMJJ_RS01425 0.68 -1.0
278,842 + MMJJ_RS01425 0.68 -3.4
278,883 + MMJJ_RS01425 0.73 -0.6
278,883 + MMJJ_RS01425 0.73 -0.3
278,892 - MMJJ_RS01425 0.73 -0.3
278,893 + MMJJ_RS01425 0.74 +0.3
278,903 - MMJJ_RS01425 0.75 -0.1
278,903 - MMJJ_RS01425 0.75 -1.0
278,903 - MMJJ_RS01425 0.75 -0.6
278,903 - MMJJ_RS01425 0.75 -1.3
278,904 + MMJJ_RS01425 0.75 -1.4
278,919 + MMJJ_RS01425 0.76 -0.5
278,924 - MMJJ_RS01425 0.77 -0.7
278,924 - MMJJ_RS01425 0.77 +0.1
278,925 + MMJJ_RS01425 0.77 -0.9
278,925 + MMJJ_RS01425 0.77 -0.6
278,925 + MMJJ_RS01425 0.77 -1.6
278,930 - MMJJ_RS01425 0.77 -0.2
278,962 + MMJJ_RS01425 0.81 -0.1
278,962 + MMJJ_RS01425 0.81 -0.3
278,968 - MMJJ_RS01425 0.81 -0.2
278,969 + MMJJ_RS01425 0.82 -1.6
279,035 + MMJJ_RS01425 0.88 -0.4
279,157 - -1.3
279,158 + -1.4
279,158 + -0.5
279,159 - +0.1
279,159 - -0.5
279,160 + +0.0
279,208 + +0.4
279,210 - +1.8
279,210 - -1.5
279,213 - +0.9
279,213 - -1.6
279,213 - +1.9
279,214 + +0.5
279,216 - +0.4
279,216 - -0.1
279,217 + +1.5
279,218 - +0.5
279,218 - +1.3
279,218 - -2.6
279,219 + +0.5
279,259 - +1.0
279,260 + +1.5
279,278 + +1.6
279,315 + MMJJ_RS01430 0.15 +2.1
279,354 - MMJJ_RS01430 0.23 +0.8
279,354 - +2.5
279,354 - MMJJ_RS01430 0.23 +0.6
279,354 - MMJJ_RS01430 0.23 +1.7
279,355 + MMJJ_RS01430 0.23 +1.0
279,355 + MMJJ_RS01430 0.23 +2.2
279,356 - MMJJ_RS01430 0.23 +1.9
279,363 + MMJJ_RS01430 0.24 +1.4
279,368 - MMJJ_RS01430 0.25 +0.5
279,447 - MMJJ_RS01430 0.40 +0.7
279,448 + MMJJ_RS01430 0.40 +1.0
279,457 - MMJJ_RS01430 0.41 +1.6
279,458 + MMJJ_RS01430 0.42 +1.1
279,458 + MMJJ_RS01430 0.42 +1.4
279,468 - MMJJ_RS01430 0.43 +2.5
279,468 - MMJJ_RS01430 0.43 +1.5
279,469 + MMJJ_RS01430 0.44 +2.0
279,503 - MMJJ_RS01430 0.50 +1.7
279,504 + MMJJ_RS01430 0.50 +1.6
279,567 + MMJJ_RS01430 0.62 +2.1
279,574 - MMJJ_RS01430 0.63 +2.4
279,574 - MMJJ_RS01430 0.63 -1.7
279,588 + MMJJ_RS01430 0.65 +2.2
279,611 + MMJJ_RS01430 0.70 +1.2
279,611 + MMJJ_RS01430 0.70 +2.0
279,635 + MMJJ_RS01430 0.74 +1.6
279,640 + MMJJ_RS01430 0.75 -0.9
279,677 + MMJJ_RS01430 0.82 +0.5
279,681 + MMJJ_RS01430 0.82 +2.3
279,747 + +1.8
279,779 - +1.8
279,779 - +2.4
279,780 + +1.6
279,814 + +1.4
279,869 + MMJJ_RS01435 0.12 +2.6
279,869 + MMJJ_RS01435 0.12 +1.2
279,873 - MMJJ_RS01435 0.13 -0.0
279,982 - MMJJ_RS01435 0.28 +0.8
279,982 - MMJJ_RS01435 0.28 +1.9
279,983 + MMJJ_RS01435 0.29 +2.5
279,983 + MMJJ_RS01435 0.29 +2.0
279,985 + MMJJ_RS01435 0.29 -2.5
280,016 - MMJJ_RS01435 0.33 +2.2
280,017 + MMJJ_RS01435 0.33 +2.1
280,018 - MMJJ_RS01435 0.34 +1.6
280,019 + MMJJ_RS01435 0.34 +1.7
280,035 - MMJJ_RS01435 0.36 +1.5
280,040 + MMJJ_RS01435 0.37 +1.7
280,040 + MMJJ_RS01435 0.37 +1.9
280,063 + MMJJ_RS01435 0.40 +2.2
280,063 + MMJJ_RS01435 0.40 +1.4
280,091 - MMJJ_RS01435 0.44 +1.9
280,091 - MMJJ_RS01435 0.44 +2.5
280,095 - MMJJ_RS01435 0.45 +1.3
280,100 - MMJJ_RS01435 0.45 +2.6
280,101 + +0.8
280,124 - MMJJ_RS01435 0.49 +1.0
280,125 + MMJJ_RS01435 0.49 +1.2
280,125 + MMJJ_RS01435 0.49 +0.9
280,148 - MMJJ_RS01435 0.52 +3.4
280,148 - -0.5
280,148 - MMJJ_RS01435 0.52 +2.8
280,148 - MMJJ_RS01435 0.52 +2.0
280,149 + MMJJ_RS01435 0.52 +0.8
280,149 + MMJJ_RS01435 0.52 +2.2
280,149 + MMJJ_RS01435 0.52 +2.3
280,149 + MMJJ_RS01435 0.52 +1.7
280,152 - MMJJ_RS01435 0.53 +2.9
280,153 + MMJJ_RS01435 0.53 +1.0
280,164 - MMJJ_RS01435 0.54 +1.1
280,164 - MMJJ_RS01435 0.54 +1.8
280,165 + MMJJ_RS01435 0.55 +2.5
280,165 + MMJJ_RS01435 0.55 +1.3
280,213 - MMJJ_RS01435 0.61 +2.2
280,213 - MMJJ_RS01435 0.61 +4.7
280,213 - MMJJ_RS01435 0.61 +1.1
280,213 - MMJJ_RS01435 0.61 +1.2
280,214 + MMJJ_RS01435 0.62 +1.6
280,214 + MMJJ_RS01435 0.62 +2.5
280,214 + MMJJ_RS01435 0.62 +2.2
280,214 + MMJJ_RS01435 0.62 +1.1
280,215 - MMJJ_RS01435 0.62 +1.9
280,215 - MMJJ_RS01435 0.62 +1.9
280,215 - MMJJ_RS01435 0.62 +1.8
280,216 + MMJJ_RS01435 0.62 +2.9
280,216 + MMJJ_RS01435 0.62 +2.0
280,221 - MMJJ_RS01435 0.63 +2.6
280,221 - MMJJ_RS01435 0.63 +1.7
280,245 + MMJJ_RS01435 0.66 +3.2
280,272 + MMJJ_RS01435 0.70 +1.8
280,305 - MMJJ_RS01435 0.75 +1.3
280,342 - MMJJ_RS01435 0.80 +1.9
280,343 + MMJJ_RS01435 0.80 +2.6
280,343 + MMJJ_RS01435 0.80 +1.3
280,349 + MMJJ_RS01435 0.81 +2.8
280,391 + MMJJ_RS01435 0.87 +1.4
280,393 - MMJJ_RS01435 0.87 +1.4
280,394 + MMJJ_RS01435 0.87 +1.9
280,394 + MMJJ_RS01435 0.87 +1.5
280,395 - MMJJ_RS01435 0.87 +0.7
280,396 + MMJJ_RS01435 0.87 -0.0
280,424 + +2.4
280,467 - +0.6
280,468 + -0.0
280,473 + -0.6
280,473 + +0.3
280,503 + -0.4
280,513 - +0.6
280,517 - -0.5
280,518 + -2.3
280,536 + -2.6
280,599 - -1.4
280,599 - +0.3
280,614 + +2.4
280,667 - -0.1
280,668 + -1.9
280,692 - MMJJ_RS01440 0.11 -1.2
280,692 - MMJJ_RS01440 0.11 +0.6
280,693 + MMJJ_RS01440 0.11 +0.6
280,693 + MMJJ_RS01440 0.11 -0.0
280,712 - MMJJ_RS01440 0.12 +1.3
280,712 - MMJJ_RS01440 0.12 +0.8
280,720 - MMJJ_RS01440 0.13 +0.1
280,720 - MMJJ_RS01440 0.13 +0.0
280,720 - MMJJ_RS01440 0.13 -0.7

Or see this region's nucleotide sequence