Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14890

Experiment: R2A with bismuth(III) chloride 0.03125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bismuth(III) chloride 0.03125 mM
3,288,540	+				+0.2
3,288,603	+				-0.8
3,288,603	+				-0.5
3,288,603	+				+1.0
3,288,603	+				-1.5
3,288,604	-				+4.1
3,288,939	+		LRK54_RS14880	0.63	+1.2
3,288,939	+		LRK54_RS14880	0.63	-1.0
3,288,939	+		LRK54_RS14880	0.63	-0.9
3,288,939	+		LRK54_RS14880	0.63	+0.2
3,288,939	+		LRK54_RS14880	0.63	+0.2
3,288,939	+		LRK54_RS14880	0.63	+0.0
3,288,939	+		LRK54_RS14880	0.63	-0.3
3,288,939	+		LRK54_RS14880	0.63	+0.8
3,288,939	+		LRK54_RS14880	0.63	-0.7
3,288,939	+		LRK54_RS14880	0.63	+0.2
3,288,940	-		LRK54_RS14880	0.64	-0.7
3,288,940	-		LRK54_RS14880	0.64	-0.9
3,288,940	-		LRK54_RS14880	0.64	+0.5
3,288,940	-		LRK54_RS14880	0.64	-1.3
3,288,940	-		LRK54_RS14880	0.64	-1.2
3,288,940	-		LRK54_RS14880	0.64	-0.5
3,288,989	+		LRK54_RS14880	0.76	-0.3
3,288,989	+		LRK54_RS14880	0.76	-0.5
3,288,989	+		LRK54_RS14880	0.76	-2.2
3,288,989	+		LRK54_RS14880	0.76	-0.2
3,288,989	+		LRK54_RS14880	0.76	+0.7
3,288,989	+		LRK54_RS14880	0.76	+0.7
3,288,989	+		LRK54_RS14880	0.76	-0.2
3,288,989	+		LRK54_RS14880	0.76	-1.9
3,288,989	+		LRK54_RS14880	0.76	+0.8
3,288,989	+		LRK54_RS14880	0.76	-0.2
3,288,989	+		LRK54_RS14880	0.76	+0.2
3,288,989	+		LRK54_RS14880	0.76	+0.2
3,288,990	-		LRK54_RS14880	0.76	-0.2
3,288,990	-		LRK54_RS14880	0.76	+0.5
3,288,990	-		LRK54_RS14880	0.76	+1.8
3,288,990	-		LRK54_RS14880	0.76	-0.6
3,288,990	-		LRK54_RS14880	0.76	-1.1
3,288,990	-		LRK54_RS14880	0.76	-1.5
3,288,990	-		LRK54_RS14880	0.76	-0.6
3,288,990	-		LRK54_RS14880	0.76	+0.0
3,289,022	+		LRK54_RS14880	0.84	-0.8
3,289,022	+		LRK54_RS14880	0.84	+0.2
3,289,022	+		LRK54_RS14880	0.84	-0.0
3,289,022	+		LRK54_RS14880	0.84	-1.0
3,289,022	+		LRK54_RS14880	0.84	+0.2
3,289,023	-		LRK54_RS14880	0.84	-0.3
3,289,023	-		LRK54_RS14880	0.84	-0.2
3,289,023	-		LRK54_RS14880	0.84	+0.2
3,289,023	-		LRK54_RS14880	0.84	-0.5
3,289,023	-		LRK54_RS14880	0.84	+0.8
3,289,023	-		LRK54_RS14880	0.84	+0.8
3,289,023	-		LRK54_RS14880	0.84	+0.8
3,289,023	-		LRK54_RS14880	0.84	-1.2
3,289,078	+				+0.4
3,289,078	+				+0.5
3,289,078	+				-0.2
3,289,078	+				+1.5
3,289,078	+				+1.3
3,289,078	+				-1.3
3,289,078	+				+0.5
3,289,078	+				+0.5
3,289,079	-				+0.0
3,289,079	-				+0.5
3,289,079	-				-1.0
3,289,079	-				+1.8
3,289,079	-				-0.9
3,289,079	-				+0.3
3,289,082	+				-1.1
3,289,082	+				-1.4
3,289,082	+				+1.2
3,289,082	+				+0.1
3,289,082	+				+0.6
3,289,082	+				-0.9
3,289,082	+				+1.8
3,289,082	+				+0.6
3,289,082	+				+0.4
3,289,082	+				+0.3
3,289,082	+				-1.0
3,289,082	+				+0.2
3,289,082	+				-2.4
3,289,082	+				+0.0
3,289,082	+				-0.2
3,289,082	+				+0.2
3,289,082	+				+0.0
3,289,082	+				-0.2
3,289,082	+				-0.7
3,289,082	+				-1.0
3,289,082	+				+0.2
3,289,083	-				-1.5
3,289,083	-				-0.2
3,289,083	-				-0.8
3,289,083	-				-1.2
3,289,083	-				-2.2
3,289,083	-				-0.5
3,289,083	-				+0.2
3,289,083	-				-0.1
3,289,083	-				+2.8
3,289,083	-				+0.6
3,289,083	-				-0.2
3,289,083	-				-2.5
3,289,083	-				-0.3
3,289,083	-				-1.4
3,289,083	-				-0.2
3,289,083	-				+0.8
3,289,271	+				+2.6
3,289,271	+				-1.2
3,289,282	+				-0.2
3,289,282	+				-0.1
3,289,282	+				+0.2
3,289,282	+				-1.2
3,289,282	+				+0.5
3,289,282	+				-1.5
3,289,282	+				-0.3
3,289,282	+				+2.4
3,289,282	+				+0.2
3,289,282	+				-1.3
3,289,283	-				-0.6
3,289,283	-				-0.4
3,289,283	-				+1.1
3,289,283	-				+0.0
3,289,283	-				-0.3
3,289,659	+		LRK54_RS14890	0.14	-1.2
3,289,659	+		LRK54_RS14890	0.14	+0.7
3,289,659	+		LRK54_RS14890	0.14	+0.3
3,289,659	+		LRK54_RS14890	0.14	-1.2
3,289,659	+		LRK54_RS14890	0.14	+0.7
3,289,659	+		LRK54_RS14890	0.14	+0.2
3,289,659	+		LRK54_RS14890	0.14	+0.4
3,289,659	+		LRK54_RS14890	0.14	-0.3
3,289,660	-		LRK54_RS14890	0.14	+0.8
3,289,660	-		LRK54_RS14890	0.14	+0.0
3,289,660	-		LRK54_RS14890	0.14	-0.8
3,289,660	-		LRK54_RS14890	0.14	+0.2
3,289,660	-		LRK54_RS14890	0.14	+0.8
3,289,660	-		LRK54_RS14890	0.14	+0.8
3,289,660	-		LRK54_RS14890	0.14	-0.8
3,289,800	+		LRK54_RS14890	0.22	-0.2
3,289,800	+		LRK54_RS14890	0.22	+0.7
3,289,800	+		LRK54_RS14890	0.22	+3.0
3,289,801	-		LRK54_RS14890	0.22	+0.2
3,289,801	-		LRK54_RS14890	0.22	+0.0
3,289,801	-		LRK54_RS14890	0.22	-0.2
3,289,801	-		LRK54_RS14890	0.22	-0.6
3,289,818	+		LRK54_RS14890	0.23	-0.3
3,289,818	+		LRK54_RS14890	0.23	+0.2
3,289,818	+		LRK54_RS14890	0.23	-0.5
3,289,818	+		LRK54_RS14890	0.23	-0.2
3,289,818	+		LRK54_RS14890	0.23	+1.0
3,289,818	+		LRK54_RS14890	0.23	-0.3
3,289,818	+		LRK54_RS14890	0.23	-1.2
3,289,818	+		LRK54_RS14890	0.23	-1.3
3,289,818	+		LRK54_RS14890	0.23	-0.3
3,289,818	+		LRK54_RS14890	0.23	+0.0
3,289,818	+		LRK54_RS14890	0.23	+1.8
3,289,818	+		LRK54_RS14890	0.23	+0.2
3,289,818	+		LRK54_RS14890	0.23	-0.1
3,289,818	+		LRK54_RS14890	0.23	+0.4
3,289,818	+		LRK54_RS14890	0.23	+0.4
3,289,818	+		LRK54_RS14890	0.23	-1.5
3,289,818	+		LRK54_RS14890	0.23	-0.3
3,289,818	+		LRK54_RS14890	0.23	+0.8
3,289,818	+		LRK54_RS14890	0.23	-0.1
3,289,818	+		LRK54_RS14890	0.23	+1.0
3,289,818	+		LRK54_RS14890	0.23	+2.0
3,289,818	+		LRK54_RS14890	0.23	+0.6
3,289,818	+		LRK54_RS14890	0.23	+1.1
3,289,818	+		LRK54_RS14890	0.23	-0.1
3,289,818	+		LRK54_RS14890	0.23	-0.5
3,289,818	+		LRK54_RS14890	0.23	+0.8
3,289,818	+		LRK54_RS14890	0.23	-1.1
3,289,819	-		LRK54_RS14890	0.23	+0.7
3,289,819	-		LRK54_RS14890	0.23	-1.3
3,289,819	-		LRK54_RS14890	0.23	-1.5
3,289,819	-		LRK54_RS14890	0.23	+0.8
3,289,819	-		LRK54_RS14890	0.23	+1.8
3,289,819	-		LRK54_RS14890	0.23	+0.2
3,289,819	-		LRK54_RS14890	0.23	-0.1
3,289,819	-		LRK54_RS14890	0.23	-1.5
3,289,819	-		LRK54_RS14890	0.23	+0.3
3,289,819	-		LRK54_RS14890	0.23	+0.7
3,289,819	-		LRK54_RS14890	0.23	+0.5
3,289,819	-		LRK54_RS14890	0.23	+1.1
3,289,819	-		LRK54_RS14890	0.23	-0.5
3,289,819	-		LRK54_RS14890	0.23	-1.6
3,289,819	-		LRK54_RS14890	0.23	+0.4
3,289,819	-		LRK54_RS14890	0.23	-0.1
3,289,819	-		LRK54_RS14890	0.23	-0.2
3,289,819	-		LRK54_RS14890	0.23	+0.6
3,289,819	-		LRK54_RS14890	0.23	+0.2
3,289,819	-		LRK54_RS14890	0.23	-1.3
3,289,820	+		LRK54_RS14890	0.23	-0.6
3,289,867	+		LRK54_RS14890	0.26	-0.2
3,289,868	-		LRK54_RS14890	0.26	-1.9
3,289,905	+		LRK54_RS14890	0.28	+0.6
3,289,905	+		LRK54_RS14890	0.28	+0.4
3,289,905	+		LRK54_RS14890	0.28	+2.8
3,289,905	+		LRK54_RS14890	0.28	-1.5
3,289,905	+		LRK54_RS14890	0.28	+0.2
3,289,905	+		LRK54_RS14890	0.28	+0.9
3,289,905	+		LRK54_RS14890	0.28	-0.8
3,289,906	-		LRK54_RS14890	0.28	+0.9
3,289,906	-		LRK54_RS14890	0.28	-0.1
3,289,906	-		LRK54_RS14890	0.28	-0.5
3,289,906	-		LRK54_RS14890	0.28	-2.1
3,289,906	-		LRK54_RS14890	0.28	+0.0
3,289,906	-		LRK54_RS14890	0.28	+0.2
3,289,906	-		LRK54_RS14890	0.28	+0.8
3,289,906	-		LRK54_RS14890	0.28	+0.8
3,289,906	-		LRK54_RS14890	0.28	+0.4
3,289,952	+		LRK54_RS14890	0.31	+1.3
3,289,952	+		LRK54_RS14890	0.31	+0.5
3,289,953	-		LRK54_RS14890	0.31	-0.2
3,289,992	+		LRK54_RS14890	0.33	+0.1
3,289,992	+		LRK54_RS14890	0.33	+0.8
3,289,992	+		LRK54_RS14890	0.33	-0.1
3,289,992	+		LRK54_RS14890	0.33	-0.5
3,289,992	+		LRK54_RS14890	0.33	-0.5
3,289,992	+		LRK54_RS14890	0.33	+0.0
3,289,992	+		LRK54_RS14890	0.33	+0.1
3,289,993	-		LRK54_RS14890	0.34	-0.2
3,289,993	-		LRK54_RS14890	0.34	-0.9
3,289,993	-		LRK54_RS14890	0.34	+0.5
3,289,993	-		LRK54_RS14890	0.34	+0.8
3,289,993	-		LRK54_RS14890	0.34	-0.8
3,290,163	+		LRK54_RS14890	0.44	-0.5
3,290,163	+		LRK54_RS14890	0.44	-0.5
3,290,163	+		LRK54_RS14890	0.44	+2.2
3,290,163	+		LRK54_RS14890	0.44	+1.8
3,290,163	+		LRK54_RS14890	0.44	-1.4
3,290,163	+		LRK54_RS14890	0.44	+1.0
3,290,163	+		LRK54_RS14890	0.44	-0.2
3,290,163	+		LRK54_RS14890	0.44	-1.0
3,290,163	+		LRK54_RS14890	0.44	+1.8
3,290,163	+		LRK54_RS14890	0.44	+1.0
3,290,163	+		LRK54_RS14890	0.44	-1.3
3,290,163	+		LRK54_RS14890	0.44	+0.2
3,290,163	+		LRK54_RS14890	0.44	-0.6
3,290,163	+		LRK54_RS14890	0.44	+0.2
3,290,163	+		LRK54_RS14890	0.44	-0.8
3,290,163	+		LRK54_RS14890	0.44	-0.2
3,290,164	-		LRK54_RS14890	0.44	+1.8
3,290,164	-		LRK54_RS14890	0.44	+1.8
3,290,164	-		LRK54_RS14890	0.44	-0.4
3,290,164	-		LRK54_RS14890	0.44	+1.6
3,290,164	-		LRK54_RS14890	0.44	+0.1
3,290,164	-		LRK54_RS14890	0.44	-0.2
3,290,164	-		LRK54_RS14890	0.44	-0.0
3,290,164	-		LRK54_RS14890	0.44	-1.5
3,290,164	-		LRK54_RS14890	0.44	-0.8
3,290,164	-		LRK54_RS14890	0.44	-0.0
3,290,164	-		LRK54_RS14890	0.44	-0.3
3,290,164	-		LRK54_RS14890	0.44	-2.3
3,290,164	-		LRK54_RS14890	0.44	-0.2
3,290,164	-		LRK54_RS14890	0.44	+0.4
3,290,164	-		LRK54_RS14890	0.44	+1.8
3,290,164	-		LRK54_RS14890	0.44	+2.8
3,290,164	-		LRK54_RS14890	0.44	+0.4
3,290,164	-		LRK54_RS14890	0.44	+0.1
3,290,164	-		LRK54_RS14890	0.44	+0.2
3,290,164	-		LRK54_RS14890	0.44	+1.8
3,290,164	-		LRK54_RS14890	0.44	-0.1
3,290,164	-		LRK54_RS14890	0.44	-0.3
3,290,164	-		LRK54_RS14890	0.44	+0.1
3,290,164	-		LRK54_RS14890	0.44	+0.0
3,290,164	-		LRK54_RS14890	0.44	-1.0
3,290,301	+		LRK54_RS14890	0.52	-0.0
3,290,301	+		LRK54_RS14890	0.52	-0.3
3,290,301	+		LRK54_RS14890	0.52	+0.1
3,290,301	+		LRK54_RS14890	0.52	+0.2
3,290,301	+		LRK54_RS14890	0.52	-2.1
3,290,301	+		LRK54_RS14890	0.52	+0.0
3,290,302	-		LRK54_RS14890	0.52	+0.6
3,290,302	-		LRK54_RS14890	0.52	-0.5
3,290,302	-		LRK54_RS14890	0.52	-0.4
3,290,302	-		LRK54_RS14890	0.52	-0.4
3,290,302	-		LRK54_RS14890	0.52	-1.3
3,290,302	-		LRK54_RS14890	0.52	-1.8
3,290,340	+		LRK54_RS14890	0.54	-0.7
3,290,340	+		LRK54_RS14890	0.54	+0.5
3,290,340	+		LRK54_RS14890	0.54	+1.1
3,290,340	+		LRK54_RS14890	0.54	-0.2
3,290,340	+		LRK54_RS14890	0.54	-0.3
3,290,340	+		LRK54_RS14890	0.54	+0.8
3,290,340	+		LRK54_RS14890	0.54	-2.0
3,290,340	+		LRK54_RS14890	0.54	-0.1
3,290,341	-		LRK54_RS14890	0.54	+1.8
3,290,341	-		LRK54_RS14890	0.54	-0.5
3,290,341	-		LRK54_RS14890	0.54	-1.1
3,290,341	-		LRK54_RS14890	0.54	+3.2
3,290,341	-		LRK54_RS14890	0.54	+1.0
3,290,341	-		LRK54_RS14890	0.54	+1.2
3,290,341	-		LRK54_RS14890	0.54	+0.8
3,290,341	-		LRK54_RS14890	0.54	+1.5
3,290,373	+		LRK54_RS14890	0.56	+0.6
3,290,373	+		LRK54_RS14890	0.56	+0.8
3,290,373	+		LRK54_RS14890	0.56	-0.1
3,290,373	+		LRK54_RS14890	0.56	+0.7
3,290,373	+		LRK54_RS14890	0.56	+2.8
3,290,373	+		LRK54_RS14890	0.56	-1.3
3,290,373	+		LRK54_RS14890	0.56	-0.5
3,290,373	+		LRK54_RS14890	0.56	+0.8
3,290,373	+		LRK54_RS14890	0.56	-2.4
3,290,373	+		LRK54_RS14890	0.56	-0.0
3,290,373	+		LRK54_RS14890	0.56	+1.2
3,290,374	-		LRK54_RS14890	0.56	+1.0
3,290,374	-		LRK54_RS14890	0.56	+0.1
3,290,374	-		LRK54_RS14890	0.56	+0.1
3,290,374	-		LRK54_RS14890	0.56	-0.6
3,290,374	-		LRK54_RS14890	0.56	-0.2
3,290,374	-		LRK54_RS14890	0.56	+0.2
3,290,374	-		LRK54_RS14890	0.56	-0.8
3,290,374	-		LRK54_RS14890	0.56	+0.4
3,290,374	-		LRK54_RS14890	0.56	-0.5
3,290,374	-		LRK54_RS14890	0.56	-0.6
3,290,374	-		LRK54_RS14890	0.56	-1.6
3,290,448	+		LRK54_RS14890	0.60	+0.6
3,290,448	+		LRK54_RS14890	0.60	-1.3
3,290,448	+		LRK54_RS14890	0.60	-0.1
3,290,448	+		LRK54_RS14890	0.60	+0.9
3,290,448	+		LRK54_RS14890	0.60	-0.5
3,290,449	-		LRK54_RS14890	0.61	+0.1
3,290,449	-		LRK54_RS14890	0.61	-1.0
3,290,449	-		LRK54_RS14890	0.61	-1.3
3,290,449	-		LRK54_RS14890	0.61	-0.2
3,290,457	+		LRK54_RS14890	0.61	+0.0
3,290,457	+		LRK54_RS14890	0.61	-0.0
3,290,458	-		LRK54_RS14890	0.61	+0.3
3,290,493	+		LRK54_RS14890	0.63	-1.3
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3,290,709	+		LRK54_RS14890	0.76	-1.0
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3,290,709	+		LRK54_RS14890	0.76	-0.1
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3,290,710	-		LRK54_RS14890	0.76	+1.0
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3,290,710	-		LRK54_RS14890	0.76	-0.1
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3,290,712	+		LRK54_RS14890	0.76	-2.1
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3,290,944	-		LRK54_RS14890	0.90	+0.2
3,291,150	+				-0.9
3,291,150	+				-0.0
3,291,150	+				-1.3
3,291,151	-				+0.4
3,291,151	-				+0.2
3,291,151	-				-0.3
3,291,241	-		LRK54_RS14895	0.16	-1.5
3,291,728	+				+0.7
3,291,728	+				-0.5
3,291,729	-				-1.0
3,291,729	-				-1.3
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3,291,800	-				+0.8
3,291,836	-				-1.0
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3,291,836	-				-0.8
3,291,905	-				-0.6
3,291,932	-				-0.3
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3,292,039	+		LRK54_RS14900	0.14	-1.2
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3,292,087	+		LRK54_RS14900	0.16	+0.2
3,292,088	-		LRK54_RS14900	0.16	+1.0