Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07525

Experiment: R2A with bismuth(III) chloride 0.03125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with bismuth(III) chloride 0.03125 mM
1,620,710	+		LRK54_RS07520	0.19	-1.5
1,620,711	-		LRK54_RS07520	0.19	+0.9
1,620,743	+		LRK54_RS07520	0.23	+1.1
1,620,743	+		LRK54_RS07520	0.23	-0.4
1,620,743	+		LRK54_RS07520	0.23	-0.3
1,620,743	+		LRK54_RS07520	0.23	+0.9
1,620,743	+		LRK54_RS07520	0.23	-1.0
1,620,743	+		LRK54_RS07520	0.23	-0.3
1,620,743	+		LRK54_RS07520	0.23	-0.0
1,620,743	+		LRK54_RS07520	0.23	-0.9
1,620,744	-		LRK54_RS07520	0.23	+0.3
1,620,744	-		LRK54_RS07520	0.23	-0.9
1,620,744	-		LRK54_RS07520	0.23	+0.4
1,620,744	-		LRK54_RS07520	0.23	-1.8
1,620,744	-		LRK54_RS07520	0.23	+0.3
1,620,744	-		LRK54_RS07520	0.23	-1.3
1,620,744	-		LRK54_RS07520	0.23	+2.1
1,620,752	+		LRK54_RS07520	0.24	-0.2
1,620,752	+		LRK54_RS07520	0.24	-1.1
1,620,752	+		LRK54_RS07520	0.24	-1.2
1,620,753	-		LRK54_RS07520	0.24	-0.2
1,620,753	-		LRK54_RS07520	0.24	-0.7
1,620,753	-		LRK54_RS07520	0.24	+0.7
1,620,753	-		LRK54_RS07520	0.24	-0.5
1,620,753	-		LRK54_RS07520	0.24	-1.5
1,620,798	+		LRK54_RS07520	0.29	-0.5
1,620,798	+		LRK54_RS07520	0.29	+0.8
1,620,798	+		LRK54_RS07520	0.29	-3.2
1,621,001	+		LRK54_RS07520	0.51	-0.3
1,621,001	+		LRK54_RS07520	0.51	-0.9
1,621,001	+		LRK54_RS07520	0.51	+0.5
1,621,001	+		LRK54_RS07520	0.51	-1.0
1,621,001	+		LRK54_RS07520	0.51	-0.7
1,621,001	+		LRK54_RS07520	0.51	-1.3
1,621,001	+		LRK54_RS07520	0.51	-1.4
1,621,002	-		LRK54_RS07520	0.51	+1.7
1,621,002	-		LRK54_RS07520	0.51	-0.9
1,621,067	+		LRK54_RS07520	0.58	+1.1
1,621,067	+		LRK54_RS07520	0.58	-0.4
1,621,067	+		LRK54_RS07520	0.58	-0.9
1,621,067	+		LRK54_RS07520	0.58	+0.1
1,621,067	+		LRK54_RS07520	0.58	+0.5
1,621,067	+		LRK54_RS07520	0.58	+1.2
1,621,067	+		LRK54_RS07520	0.58	-0.7
1,621,067	+		LRK54_RS07520	0.58	-0.9
1,621,067	+		LRK54_RS07520	0.58	+0.8
1,621,067	+		LRK54_RS07520	0.58	-1.1
1,621,067	+		LRK54_RS07520	0.58	-1.7
1,621,067	+		LRK54_RS07520	0.58	-0.2
1,621,067	+		LRK54_RS07520	0.58	-1.0
1,621,067	+		LRK54_RS07520	0.58	+0.1
1,621,067	+		LRK54_RS07520	0.58	+0.1
1,621,067	+		LRK54_RS07520	0.58	-0.7
1,621,067	+		LRK54_RS07520	0.58	-0.3
1,621,067	+		LRK54_RS07520	0.58	+0.1
1,621,067	+		LRK54_RS07520	0.58	-0.3
1,621,067	+		LRK54_RS07520	0.58	-0.5
1,621,067	+		LRK54_RS07520	0.58	+0.1
1,621,067	+		LRK54_RS07520	0.58	-0.8
1,621,067	+		LRK54_RS07520	0.58	+0.7
1,621,067	+		LRK54_RS07520	0.58	-0.2
1,621,067	+		LRK54_RS07520	0.58	+1.2
1,621,068	-		LRK54_RS07520	0.59	-0.3
1,621,068	-		LRK54_RS07520	0.59	-0.9
1,621,068	-		LRK54_RS07520	0.59	+0.2
1,621,068	-		LRK54_RS07520	0.59	+0.7
1,621,068	-		LRK54_RS07520	0.59	+0.7
1,621,068	-		LRK54_RS07520	0.59	+1.2
1,621,068	-		LRK54_RS07520	0.59	+0.6
1,621,068	-		LRK54_RS07520	0.59	+2.7
1,621,068	-		LRK54_RS07520	0.59	-2.1
1,621,068	-		LRK54_RS07520	0.59	-0.6
1,621,068	-		LRK54_RS07520	0.59	-1.0
1,621,068	-		LRK54_RS07520	0.59	-0.5
1,621,068	-		LRK54_RS07520	0.59	-1.5
1,621,068	-		LRK54_RS07520	0.59	-1.4
1,621,068	-		LRK54_RS07520	0.59	-0.2
1,621,068	-		LRK54_RS07520	0.59	+0.2
1,621,068	-		LRK54_RS07520	0.59	-0.2
1,621,068	-		LRK54_RS07520	0.59	+0.6
1,621,068	-		LRK54_RS07520	0.59	-0.5
1,621,068	-		LRK54_RS07520	0.59	+0.2
1,621,068	-		LRK54_RS07520	0.59	-1.4
1,621,068	-		LRK54_RS07520	0.59	+0.3
1,621,068	-		LRK54_RS07520	0.59	-0.5
1,621,111	+		LRK54_RS07520	0.63	-0.9
1,621,112	-		LRK54_RS07520	0.63	+0.1
1,621,205	+		LRK54_RS07520	0.74	-1.2
1,621,267	+		LRK54_RS07520	0.80	-1.5
1,621,267	+		LRK54_RS07520	0.80	+1.0
1,621,267	+		LRK54_RS07520	0.80	+0.1
1,621,267	+		LRK54_RS07520	0.80	+0.6
1,621,267	+		LRK54_RS07520	0.80	-0.8
1,621,267	+		LRK54_RS07520	0.80	-0.2
1,621,267	+		LRK54_RS07520	0.80	-1.2
1,621,267	+		LRK54_RS07520	0.80	+0.3
1,621,267	+		LRK54_RS07520	0.80	-0.3
1,621,267	+		LRK54_RS07520	0.80	-0.3
1,621,267	+		LRK54_RS07520	0.80	-0.4
1,621,267	+		LRK54_RS07520	0.80	-0.2
1,621,268	-		LRK54_RS07520	0.81	-0.5
1,621,268	-		LRK54_RS07520	0.81	-0.2
1,621,268	-		LRK54_RS07520	0.81	+0.2
1,621,268	-		LRK54_RS07520	0.81	-1.6
1,621,268	-		LRK54_RS07520	0.81	-0.9
1,621,442	+				-1.0
1,621,442	+				-1.3
1,621,442	+				-0.6
1,621,442	+				+1.3
1,621,442	+				+1.6
1,621,443	-				-0.0
1,621,443	-				-0.5
1,621,443	-				+0.1
1,621,443	-				+0.3
1,621,443	-				-0.3
1,621,443	-				-0.2
1,621,443	-				-0.4
1,621,545	-				+0.8
1,621,545	-				-2.6
1,621,545	-				-0.3
1,621,545	-				+0.5
1,621,564	+				+0.4
1,621,564	+				-0.3
1,621,564	+				-0.3
1,621,564	+				-0.3
1,621,564	+				+0.2
1,621,564	+				-2.3
1,621,565	-				-0.3
1,621,565	-				+1.4
1,621,565	-				-1.5
1,621,565	-				+0.6
1,621,638	-		LRK54_RS07525	0.15	+0.5
1,621,733	+		LRK54_RS07525	0.22	+0.5
1,621,734	-		LRK54_RS07525	0.22	-0.8
1,621,734	-		LRK54_RS07525	0.22	+0.6
1,621,797	+		LRK54_RS07525	0.27	-0.4
1,621,798	-		LRK54_RS07525	0.27	+0.5
1,621,798	-		LRK54_RS07525	0.27	+1.7
1,621,798	-		LRK54_RS07525	0.27	-0.3
1,621,826	+		LRK54_RS07525	0.29	-0.9
1,621,826	+		LRK54_RS07525	0.29	-1.5
1,621,826	+		LRK54_RS07525	0.29	-0.2
1,621,826	+		LRK54_RS07525	0.29	-0.1
1,621,827	-		LRK54_RS07525	0.29	-0.2
1,621,883	+		LRK54_RS07525	0.33	-1.2
1,621,883	+		LRK54_RS07525	0.33	-0.9
1,621,883	+		LRK54_RS07525	0.33	-0.1
1,621,884	-		LRK54_RS07525	0.34	+0.8
1,621,884	-		LRK54_RS07525	0.34	-0.7
1,621,884	-		LRK54_RS07525	0.34	+0.7
1,621,884	-		LRK54_RS07525	0.34	+0.5
1,621,884	-		LRK54_RS07525	0.34	-0.8
1,621,884	-		LRK54_RS07525	0.34	+1.1
1,621,994	+		LRK54_RS07525	0.42	+0.5
1,621,995	-		LRK54_RS07525	0.42	+0.2
1,621,995	-		LRK54_RS07525	0.42	-0.5
1,622,081	+		LRK54_RS07525	0.49	-0.9
1,622,081	+		LRK54_RS07525	0.49	-1.6
1,622,081	+		LRK54_RS07525	0.49	-0.2
1,622,081	+		LRK54_RS07525	0.49	-0.8
1,622,081	+		LRK54_RS07525	0.49	+0.6
1,622,081	+		LRK54_RS07525	0.49	-0.4
1,622,081	+		LRK54_RS07525	0.49	+0.4
1,622,081	+		LRK54_RS07525	0.49	-1.0
1,622,081	+		LRK54_RS07525	0.49	+0.9
1,622,082	-		LRK54_RS07525	0.49	+0.1
1,622,082	-		LRK54_RS07525	0.49	-1.4
1,622,082	-		LRK54_RS07525	0.49	+1.2
1,622,082	-		LRK54_RS07525	0.49	+0.1
1,622,082	-		LRK54_RS07525	0.49	-0.7
1,622,082	-		LRK54_RS07525	0.49	+0.5
1,622,082	-		LRK54_RS07525	0.49	+0.7
1,622,082	-		LRK54_RS07525	0.49	-0.7
1,622,082	-		LRK54_RS07525	0.49	+0.7
1,622,082	-		LRK54_RS07525	0.49	+1.3
1,622,082	-		LRK54_RS07525	0.49	-0.0
1,622,082	-		LRK54_RS07525	0.49	+0.2
1,622,136	+		LRK54_RS07525	0.53	-0.2
1,622,156	+		LRK54_RS07525	0.55	-0.9
1,622,156	+		LRK54_RS07525	0.55	+0.1
1,622,156	+		LRK54_RS07525	0.55	-0.8
1,622,294	+		LRK54_RS07525	0.65	-0.1
1,622,294	+		LRK54_RS07525	0.65	-0.2
1,622,294	+		LRK54_RS07525	0.65	-0.3
1,622,294	+		LRK54_RS07525	0.65	-0.9
1,622,294	+		LRK54_RS07525	0.65	+0.1
1,622,295	-		LRK54_RS07525	0.65	-0.4
1,622,295	-		LRK54_RS07525	0.65	-1.7
1,622,295	-		LRK54_RS07525	0.65	+0.7
1,622,295	-		LRK54_RS07525	0.65	+1.3
1,622,295	-		LRK54_RS07525	0.65	-0.1
1,622,295	-		LRK54_RS07525	0.65	+1.2
1,622,295	-		LRK54_RS07525	0.65	-0.2
1,622,295	-		LRK54_RS07525	0.65	+0.7
1,622,414	+		LRK54_RS07525	0.74	-0.1
1,622,414	+		LRK54_RS07525	0.74	-0.1
1,622,414	+		LRK54_RS07525	0.74	-0.8
1,622,414	+		LRK54_RS07525	0.74	-0.0
1,622,414	+		LRK54_RS07525	0.74	-0.9
1,622,414	+		LRK54_RS07525	0.74	-0.7
1,622,414	+		LRK54_RS07525	0.74	-0.5
1,622,414	+		LRK54_RS07525	0.74	-1.6
1,622,414	+		LRK54_RS07525	0.74	-0.1
1,622,414	+		LRK54_RS07525	0.74	-0.7
1,622,415	-		LRK54_RS07525	0.74	-0.9
1,622,415	-		LRK54_RS07525	0.74	-0.7
1,622,415	-		LRK54_RS07525	0.74	-0.3
1,622,415	-		LRK54_RS07525	0.74	+0.4
1,622,415	-		LRK54_RS07525	0.74	+0.4
1,622,415	-		LRK54_RS07525	0.74	+0.7
1,622,415	-		LRK54_RS07525	0.74	+0.3
1,622,415	-		LRK54_RS07525	0.74	-0.3
1,622,519	+		LRK54_RS07525	0.82	+1.7
1,622,534	+		LRK54_RS07525	0.84	-1.3
1,622,534	+		LRK54_RS07525	0.84	-1.5
1,622,535	-		LRK54_RS07525	0.84	-1.0
1,622,613	-		LRK54_RS07525	0.90	+0.4
1,622,613	-		LRK54_RS07525	0.90	+0.1
1,622,613	-		LRK54_RS07525	0.90	-2.1
1,622,648	-				-1.6
1,622,791	+				+0.3
1,622,791	+				-0.8
1,622,791	+				+0.1
1,622,791	+				-0.3
1,622,791	+				+0.9
1,622,791	+				+0.3
1,622,791	+				+1.2
1,622,791	+				-0.2
1,622,791	+				-0.1
1,622,791	+				-0.5
1,622,791	+				+0.2
1,622,791	+				-2.5
1,622,792	-				-0.6
1,622,792	-				-0.1
1,622,792	-				-0.1
1,622,792	-				-0.6
1,622,792	-				+1.2
1,622,792	-				-0.1
1,622,792	-				+0.8
1,622,792	-				+0.3
1,622,792	-				-0.7
1,622,792	-				-0.2
1,622,792	-				-1.3
1,622,792	-				-3.4
1,622,792	-				-0.5
1,622,792	-				+0.7
1,622,792	-				+0.5
1,622,792	-				-1.8
1,622,792	-				-2.3
1,622,845	+		LRK54_RS07530	0.13	-0.4
1,622,845	+		LRK54_RS07530	0.13	+0.3
1,622,846	-		LRK54_RS07530	0.13	-1.8
1,622,863	+		LRK54_RS07530	0.15	-1.7
1,622,863	+		LRK54_RS07530	0.15	-0.6
1,622,863	+		LRK54_RS07530	0.15	-0.7
1,622,863	+		LRK54_RS07530	0.15	+0.3
1,622,864	-		LRK54_RS07530	0.15	-1.0
1,622,864	-		LRK54_RS07530	0.15	+0.1
1,622,909	+		LRK54_RS07530	0.21	+0.6
1,622,910	-		LRK54_RS07530	0.21	-0.9
1,622,910	-		LRK54_RS07530	0.21	+0.5
1,622,956	+		LRK54_RS07530	0.27	-0.3
1,622,956	+		LRK54_RS07530	0.27	-0.0
1,622,957	-		LRK54_RS07530	0.27	-0.2
1,622,957	-		LRK54_RS07530	0.27	-0.8
1,622,957	-		LRK54_RS07530	0.27	+1.9
1,622,957	-		LRK54_RS07530	0.27	+0.2
1,623,064	+		LRK54_RS07530	0.40	-0.2
1,623,064	+		LRK54_RS07530	0.40	-0.9
1,623,064	+		LRK54_RS07530	0.40	+0.1
1,623,065	-		LRK54_RS07530	0.40	-1.2
1,623,097	+		LRK54_RS07530	0.44	-0.6
1,623,097	+		LRK54_RS07530	0.44	+0.5
1,623,097	+		LRK54_RS07530	0.44	-0.2
1,623,097	+		LRK54_RS07530	0.44	-1.2
1,623,097	+		LRK54_RS07530	0.44	+0.5
1,623,097	+		LRK54_RS07530	0.44	+0.8
1,623,097	+		LRK54_RS07530	0.44	-0.6
1,623,097	+		LRK54_RS07530	0.44	-1.0
1,623,097	+		LRK54_RS07530	0.44	-0.2
1,623,097	+		LRK54_RS07530	0.44	+0.4
1,623,097	+		LRK54_RS07530	0.44	+1.3
1,623,097	+		LRK54_RS07530	0.44	+0.3
1,623,098	-		LRK54_RS07530	0.44	-0.3
1,623,098	-		LRK54_RS07530	0.44	+0.1
1,623,098	-		LRK54_RS07530	0.44	-0.5
1,623,098	-		LRK54_RS07530	0.44	-0.3
1,623,098	-		LRK54_RS07530	0.44	+0.4
1,623,098	-		LRK54_RS07530	0.44	+2.1
1,623,098	-		LRK54_RS07530	0.44	-0.8
1,623,098	-		LRK54_RS07530	0.44	+0.0
1,623,100	+		LRK54_RS07530	0.45	+0.2
1,623,100	+		LRK54_RS07530	0.45	+0.1
1,623,100	+		LRK54_RS07530	0.45	+0.3
1,623,100	+		LRK54_RS07530	0.45	-0.1
1,623,100	+		LRK54_RS07530	0.45	+1.2
1,623,100	+		LRK54_RS07530	0.45	-0.3
1,623,100	+		LRK54_RS07530	0.45	-1.1
1,623,100	+		LRK54_RS07530	0.45	-0.2
1,623,100	+		LRK54_RS07530	0.45	-1.3
1,623,100	+		LRK54_RS07530	0.45	-0.3
1,623,100	+		LRK54_RS07530	0.45	-0.3
1,623,100	+		LRK54_RS07530	0.45	-1.2
1,623,101	-		LRK54_RS07530	0.45	+0.3
1,623,101	-		LRK54_RS07530	0.45	-1.1
1,623,101	-		LRK54_RS07530	0.45	-0.3
1,623,101	-		LRK54_RS07530	0.45	+0.5
1,623,101	-		LRK54_RS07530	0.45	+1.1
1,623,101	-		LRK54_RS07530	0.45	+0.3
1,623,101	-		LRK54_RS07530	0.45	-1.5
1,623,101	-		LRK54_RS07530	0.45	-1.3
1,623,101	-		LRK54_RS07530	0.45	-0.5
1,623,101	-		LRK54_RS07530	0.45	+0.2
1,623,101	-		LRK54_RS07530	0.45	+0.7
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