Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3831

Experiment: benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3829 and Ga0059261_3830 are separated by 334 nucleotidesGa0059261_3830 and Ga0059261_3831 overlap by 4 nucleotidesGa0059261_3831 and Ga0059261_3832 are separated by 1 nucleotides Ga0059261_3829: Ga0059261_3829 - PAS domain S-box, at 3,928,384 to 3,929,922 _3829 Ga0059261_3830: Ga0059261_3830 - hypothetical protein, at 3,930,257 to 3,930,469 _3830 Ga0059261_3831: Ga0059261_3831 - Putative NADPH-quinone reductase (modulator of drug activity B), at 3,930,466 to 3,931,056 _3831 Ga0059261_3832: Ga0059261_3832 - Acyl-CoA synthetase (NDP forming), at 3,931,058 to 3,933,727 _3832 Position (kb) 3930 3931 3932Strain fitness (log2 ratio) -1 0 1at 3929.562 kb on - strand, within Ga0059261_3829at 3929.745 kb on - strand, within Ga0059261_3829at 3929.745 kb on - strand, within Ga0059261_3829at 3929.948 kb on + strandat 3929.948 kb on + strandat 3929.948 kb on + strandat 3929.949 kb on - strandat 3929.949 kb on - strandat 3929.968 kb on + strandat 3929.968 kb on + strandat 3929.997 kb on + strandat 3929.998 kb on - strandat 3930.248 kb on + strandat 3930.248 kb on + strandat 3930.249 kb on - strandat 3930.249 kb on - strandat 3930.249 kb on - strandat 3930.249 kb on - strandat 3930.337 kb on + strand, within Ga0059261_3830at 3930.626 kb on + strand, within Ga0059261_3831at 3930.627 kb on - strand, within Ga0059261_3831at 3930.635 kb on + strand, within Ga0059261_3831at 3930.636 kb on - strand, within Ga0059261_3831at 3930.636 kb on - strand, within Ga0059261_3831at 3930.636 kb on - strand, within Ga0059261_3831at 3930.636 kb on - strand, within Ga0059261_3831at 3930.797 kb on + strand, within Ga0059261_3831at 3930.797 kb on + strand, within Ga0059261_3831at 3930.797 kb on + strand, within Ga0059261_3831at 3930.848 kb on - strand, within Ga0059261_3831at 3930.965 kb on + strand, within Ga0059261_3831at 3930.966 kb on - strand, within Ga0059261_3831at 3931.684 kb on + strand, within Ga0059261_3832at 3931.685 kb on - strand, within Ga0059261_3832

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml
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3,929,562 - Ga0059261_3829 0.77 -0.1
3,929,745 - Ga0059261_3829 0.88 -0.8
3,929,745 - Ga0059261_3829 0.88 +0.7
3,929,948 + -0.4
3,929,948 + -0.0
3,929,948 + +0.1
3,929,949 - -1.1
3,929,949 - +0.1
3,929,968 + -1.3
3,929,968 + -0.2
3,929,997 + +0.5
3,929,998 - +0.0
3,930,248 + -0.3
3,930,248 + +0.3
3,930,249 - +0.9
3,930,249 - +0.0
3,930,249 - +0.0
3,930,249 - +0.5
3,930,337 + Ga0059261_3830 0.38 -1.4
3,930,626 + Ga0059261_3831 0.27 +0.0
3,930,627 - Ga0059261_3831 0.27 -0.2
3,930,635 + Ga0059261_3831 0.29 -0.8
3,930,636 - Ga0059261_3831 0.29 +0.1
3,930,636 - Ga0059261_3831 0.29 +0.9
3,930,636 - Ga0059261_3831 0.29 +0.7
3,930,636 - Ga0059261_3831 0.29 -0.7
3,930,797 + Ga0059261_3831 0.56 -0.7
3,930,797 + Ga0059261_3831 0.56 +0.4
3,930,797 + Ga0059261_3831 0.56 +0.3
3,930,848 - Ga0059261_3831 0.65 -0.0
3,930,965 + Ga0059261_3831 0.84 +0.2
3,930,966 - Ga0059261_3831 0.85 +0.4
3,931,684 + Ga0059261_3832 0.23 -0.6
3,931,685 - Ga0059261_3832 0.23 -0.1

Or see this region's nucleotide sequence