Experiment: benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3829 and Ga0059261_3830 are separated by 334 nucleotides Ga0059261_3830 and Ga0059261_3831 overlap by 4 nucleotides Ga0059261_3831 and Ga0059261_3832 are separated by 1 nucleotides
Ga0059261_3829: Ga0059261_3829 - PAS domain S-box, at 3,928,384 to 3,929,922
_3829
Ga0059261_3830: Ga0059261_3830 - hypothetical protein, at 3,930,257 to 3,930,469
_3830
Ga0059261_3831: Ga0059261_3831 - Putative NADPH-quinone reductase (modulator of drug activity B), at 3,930,466 to 3,931,056
_3831
Ga0059261_3832: Ga0059261_3832 - Acyl-CoA synthetase (NDP forming), at 3,931,058 to 3,933,727
_3832
Position (kb)
3930
3931
3932 Strain fitness (log2 ratio)
-1
0
1 at 3929.562 kb on - strand, within Ga0059261_3829 at 3929.745 kb on - strand, within Ga0059261_3829 at 3929.745 kb on - strand, within Ga0059261_3829 at 3929.948 kb on + strand at 3929.948 kb on + strand at 3929.948 kb on + strand at 3929.949 kb on - strand at 3929.949 kb on - strand at 3929.968 kb on + strand at 3929.968 kb on + strand at 3929.997 kb on + strand at 3929.998 kb on - strand at 3930.248 kb on + strand at 3930.248 kb on + strand at 3930.249 kb on - strand at 3930.249 kb on - strand at 3930.249 kb on - strand at 3930.249 kb on - strand at 3930.337 kb on + strand, within Ga0059261_3830 at 3930.626 kb on + strand, within Ga0059261_3831 at 3930.627 kb on - strand, within Ga0059261_3831 at 3930.635 kb on + strand, within Ga0059261_3831 at 3930.636 kb on - strand, within Ga0059261_3831 at 3930.636 kb on - strand, within Ga0059261_3831 at 3930.636 kb on - strand, within Ga0059261_3831 at 3930.636 kb on - strand, within Ga0059261_3831 at 3930.797 kb on + strand, within Ga0059261_3831 at 3930.797 kb on + strand, within Ga0059261_3831 at 3930.797 kb on + strand, within Ga0059261_3831 at 3930.848 kb on - strand, within Ga0059261_3831 at 3930.965 kb on + strand, within Ga0059261_3831 at 3930.966 kb on - strand, within Ga0059261_3831 at 3931.684 kb on + strand, within Ga0059261_3832 at 3931.685 kb on - strand, within Ga0059261_3832
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml remove 3,929,562 - Ga0059261_3829 0.77 -0.1 3,929,745 - Ga0059261_3829 0.88 -0.8 3,929,745 - Ga0059261_3829 0.88 +0.7 3,929,948 + -0.4 3,929,948 + -0.0 3,929,948 + +0.1 3,929,949 - -1.1 3,929,949 - +0.1 3,929,968 + -1.3 3,929,968 + -0.2 3,929,997 + +0.5 3,929,998 - +0.0 3,930,248 + -0.3 3,930,248 + +0.3 3,930,249 - +0.9 3,930,249 - +0.0 3,930,249 - +0.0 3,930,249 - +0.5 3,930,337 + Ga0059261_3830 0.38 -1.4 3,930,626 + Ga0059261_3831 0.27 +0.0 3,930,627 - Ga0059261_3831 0.27 -0.2 3,930,635 + Ga0059261_3831 0.29 -0.8 3,930,636 - Ga0059261_3831 0.29 +0.1 3,930,636 - Ga0059261_3831 0.29 +0.9 3,930,636 - Ga0059261_3831 0.29 +0.7 3,930,636 - Ga0059261_3831 0.29 -0.7 3,930,797 + Ga0059261_3831 0.56 -0.7 3,930,797 + Ga0059261_3831 0.56 +0.4 3,930,797 + Ga0059261_3831 0.56 +0.3 3,930,848 - Ga0059261_3831 0.65 -0.0 3,930,965 + Ga0059261_3831 0.84 +0.2 3,930,966 - Ga0059261_3831 0.85 +0.4 3,931,684 + Ga0059261_3832 0.23 -0.6 3,931,685 - Ga0059261_3832 0.23 -0.1
Or see this region's nucleotide sequence