Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2992

Experiment: benzoic 0.145 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2991 and Ga0059261_2992 are separated by 15 nucleotidesGa0059261_2992 and Ga0059261_2993 overlap by 1 nucleotidesGa0059261_2993 and Ga0059261_2994 are separated by 51 nucleotides Ga0059261_2991: Ga0059261_2991 - Biopolymer transport proteins, at 3,112,726 to 3,114,462 _2991 Ga0059261_2992: Ga0059261_2992 - Biopolymer transport protein, at 3,114,478 to 3,114,897 _2992 Ga0059261_2993: Ga0059261_2993 - hypothetical protein, at 3,114,897 to 3,115,607 _2993 Ga0059261_2994: Ga0059261_2994 - hypothetical protein, at 3,115,659 to 3,117,368 _2994 Position (kb) 3114 3115Strain fitness (log2 ratio) -1 0 1 2at 3113.478 kb on + strand, within Ga0059261_2991at 3113.478 kb on + strand, within Ga0059261_2991at 3113.479 kb on - strand, within Ga0059261_2991at 3113.752 kb on + strand, within Ga0059261_2991at 3113.816 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.856 kb on + strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strandat 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strandat 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.857 kb on - strand, within Ga0059261_2991at 3113.905 kb on + strand, within Ga0059261_2991at 3113.938 kb on - strand, within Ga0059261_2991at 3113.998 kb on + strand, within Ga0059261_2991at 3113.998 kb on + strand, within Ga0059261_2991at 3113.998 kb on + strand, within Ga0059261_2991at 3113.998 kb on + strand, within Ga0059261_2991at 3113.999 kb on - strand, within Ga0059261_2991at 3113.999 kb on - strand, within Ga0059261_2991at 3113.999 kb on - strand, within Ga0059261_2991at 3113.999 kb on - strand, within Ga0059261_2991at 3114.343 kb on + strandat 3114.343 kb on + strandat 3114.344 kb on - strandat 3114.344 kb on - strandat 3114.511 kb on + strandat 3114.512 kb on - strandat 3114.512 kb on - strandat 3114.512 kb on - strandat 3114.512 kb on - strandat 3114.512 kb on - strandat 3114.802 kb on + strand, within Ga0059261_2992at 3114.802 kb on + strand, within Ga0059261_2992at 3114.802 kb on + strand, within Ga0059261_2992at 3114.802 kb on + strand, within Ga0059261_2992at 3114.802 kb on + strand, within Ga0059261_2992at 3114.803 kb on - strand, within Ga0059261_2992at 3114.803 kb on - strand, within Ga0059261_2992at 3114.803 kb on - strand, within Ga0059261_2992at 3114.803 kb on - strand, within Ga0059261_2992at 3115.130 kb on - strand, within Ga0059261_2993at 3115.130 kb on - strand, within Ga0059261_2993at 3115.272 kb on + strand, within Ga0059261_2993at 3115.272 kb on + strand, within Ga0059261_2993at 3115.272 kb on + strand, within Ga0059261_2993at 3115.272 kb on + strand, within Ga0059261_2993at 3115.273 kb on - strand, within Ga0059261_2993at 3115.273 kb on - strand, within Ga0059261_2993at 3115.273 kb on - strand, within Ga0059261_2993at 3115.356 kb on + strand, within Ga0059261_2993at 3115.357 kb on - strand, within Ga0059261_2993at 3115.357 kb on - strandat 3115.357 kb on - strand, within Ga0059261_2993

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml
remove
3,113,478 + Ga0059261_2991 0.43 -0.6
3,113,478 + Ga0059261_2991 0.43 +0.2
3,113,479 - Ga0059261_2991 0.43 -1.0
3,113,752 + Ga0059261_2991 0.59 -0.4
3,113,816 + Ga0059261_2991 0.63 -0.2
3,113,856 + Ga0059261_2991 0.65 +0.2
3,113,856 + Ga0059261_2991 0.65 +0.6
3,113,856 + Ga0059261_2991 0.65 +1.4
3,113,856 + Ga0059261_2991 0.65 -0.8
3,113,856 + Ga0059261_2991 0.65 -0.5
3,113,856 + Ga0059261_2991 0.65 -0.7
3,113,856 + Ga0059261_2991 0.65 +0.2
3,113,856 + Ga0059261_2991 0.65 +0.3
3,113,856 + Ga0059261_2991 0.65 -0.4
3,113,856 + Ga0059261_2991 0.65 -0.7
3,113,856 + Ga0059261_2991 0.65 +0.6
3,113,856 + Ga0059261_2991 0.65 +0.6
3,113,856 + Ga0059261_2991 0.65 +0.1
3,113,856 + Ga0059261_2991 0.65 -1.0
3,113,856 + Ga0059261_2991 0.65 -0.4
3,113,856 + Ga0059261_2991 0.65 -0.2
3,113,856 + Ga0059261_2991 0.65 +0.4
3,113,856 + Ga0059261_2991 0.65 +0.3
3,113,856 + Ga0059261_2991 0.65 +0.1
3,113,856 + Ga0059261_2991 0.65 -0.5
3,113,856 + Ga0059261_2991 0.65 +0.3
3,113,856 + Ga0059261_2991 0.65 -1.1
3,113,856 + Ga0059261_2991 0.65 +0.1
3,113,857 - Ga0059261_2991 0.65 -0.2
3,113,857 - Ga0059261_2991 0.65 -0.4
3,113,857 - Ga0059261_2991 0.65 +0.3
3,113,857 - Ga0059261_2991 0.65 +0.2
3,113,857 - Ga0059261_2991 0.65 +0.0
3,113,857 - +0.0
3,113,857 - Ga0059261_2991 0.65 +0.2
3,113,857 - +0.8
3,113,857 - Ga0059261_2991 0.65 +0.3
3,113,857 - Ga0059261_2991 0.65 +0.3
3,113,857 - Ga0059261_2991 0.65 -0.3
3,113,857 - Ga0059261_2991 0.65 +0.1
3,113,857 - Ga0059261_2991 0.65 +1.2
3,113,905 + Ga0059261_2991 0.68 -0.4
3,113,938 - Ga0059261_2991 0.70 +0.1
3,113,998 + Ga0059261_2991 0.73 -0.0
3,113,998 + Ga0059261_2991 0.73 +0.8
3,113,998 + Ga0059261_2991 0.73 +1.2
3,113,998 + Ga0059261_2991 0.73 -0.3
3,113,999 - Ga0059261_2991 0.73 +0.4
3,113,999 - Ga0059261_2991 0.73 +0.3
3,113,999 - Ga0059261_2991 0.73 +0.5
3,113,999 - Ga0059261_2991 0.73 -0.1
3,114,343 + -0.4
3,114,343 + +0.4
3,114,344 - -0.4
3,114,344 - +1.2
3,114,511 + +0.4
3,114,512 - -0.3
3,114,512 - -0.2
3,114,512 - +0.4
3,114,512 - +0.5
3,114,512 - -0.7
3,114,802 + Ga0059261_2992 0.77 +0.1
3,114,802 + Ga0059261_2992 0.77 +0.2
3,114,802 + Ga0059261_2992 0.77 +0.7
3,114,802 + Ga0059261_2992 0.77 +0.3
3,114,802 + Ga0059261_2992 0.77 -0.0
3,114,803 - Ga0059261_2992 0.77 +1.9
3,114,803 - Ga0059261_2992 0.77 -1.0
3,114,803 - Ga0059261_2992 0.77 +0.2
3,114,803 - Ga0059261_2992 0.77 +0.1
3,115,130 - Ga0059261_2993 0.33 -0.7
3,115,130 - Ga0059261_2993 0.33 -1.2
3,115,272 + Ga0059261_2993 0.53 +0.1
3,115,272 + Ga0059261_2993 0.53 +0.2
3,115,272 + Ga0059261_2993 0.53 -0.1
3,115,272 + Ga0059261_2993 0.53 -0.1
3,115,273 - Ga0059261_2993 0.53 -0.7
3,115,273 - Ga0059261_2993 0.53 -0.2
3,115,273 - Ga0059261_2993 0.53 +0.0
3,115,356 + Ga0059261_2993 0.65 +0.3
3,115,357 - Ga0059261_2993 0.65 -0.6
3,115,357 - -0.4
3,115,357 - Ga0059261_2993 0.65 +0.3

Or see this region's nucleotide sequence