Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1757

Experiment: benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1756 and Ga0059261_1757 are separated by 136 nucleotidesGa0059261_1757 and Ga0059261_1758 overlap by 4 nucleotides Ga0059261_1756: Ga0059261_1756 - Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes, at 1,861,299 to 1,862,411 _1756 Ga0059261_1757: Ga0059261_1757 - Protein of unknown function (DUF4007), at 1,862,548 to 1,863,525 _1757 Ga0059261_1758: Ga0059261_1758 - hypothetical protein, at 1,863,522 to 1,866,845 _1758 Position (kb) 1862 1863 1864Strain fitness (log2 ratio) -2 -1 0 1 2at 1862.001 kb on + strand, within Ga0059261_1756at 1862.020 kb on - strand, within Ga0059261_1756at 1862.059 kb on - strand, within Ga0059261_1756at 1862.414 kb on + strandat 1862.438 kb on - strandat 1862.579 kb on + strandat 1862.938 kb on + strand, within Ga0059261_1757at 1863.038 kb on + strand, within Ga0059261_1757at 1863.039 kb on - strand, within Ga0059261_1757at 1863.063 kb on + strand, within Ga0059261_1757at 1863.100 kb on + strand, within Ga0059261_1757at 1863.101 kb on - strandat 1863.101 kb on - strand, within Ga0059261_1757at 1863.101 kb on - strand, within Ga0059261_1757at 1863.508 kb on + strandat 1863.508 kb on + strandat 1863.508 kb on + strandat 1863.508 kb on + strandat 1863.508 kb on + strandat 1863.660 kb on - strandat 1863.711 kb on + strandat 1864.244 kb on - strand, within Ga0059261_1758

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml
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1,862,001 + Ga0059261_1756 0.63 +0.3
1,862,020 - Ga0059261_1756 0.65 -0.5
1,862,059 - Ga0059261_1756 0.68 +0.1
1,862,414 + -1.9
1,862,438 - +0.1
1,862,579 + +0.2
1,862,938 + Ga0059261_1757 0.40 -0.0
1,863,038 + Ga0059261_1757 0.50 +0.2
1,863,039 - Ga0059261_1757 0.50 -0.2
1,863,063 + Ga0059261_1757 0.53 -0.3
1,863,100 + Ga0059261_1757 0.56 +0.5
1,863,101 - +2.3
1,863,101 - Ga0059261_1757 0.57 +0.4
1,863,101 - Ga0059261_1757 0.57 +1.1
1,863,508 + +0.1
1,863,508 + +1.0
1,863,508 + -0.1
1,863,508 + -0.5
1,863,508 + -1.4
1,863,660 - +0.3
1,863,711 + +0.1
1,864,244 - Ga0059261_1758 0.22 +0.2

Or see this region's nucleotide sequence