Experiment: benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1734 and Ga0059261_1735 are separated by 118 nucleotides Ga0059261_1735 and Ga0059261_1736 overlap by 4 nucleotides Ga0059261_1736 and Ga0059261_1737 are separated by 44 nucleotides Ga0059261_1737 and Ga0059261_1738 are separated by 9 nucleotides
Ga0059261_1734: Ga0059261_1734 - ATP synthase alpha/beta family, nucleotide-binding domain, at 1,838,391 to 1,838,885
_1734
Ga0059261_1735: Ga0059261_1735 - DNA replication protein, at 1,839,004 to 1,839,834
_1735
Ga0059261_1736: Ga0059261_1736 - Transposase and inactivated derivatives, at 1,839,831 to 1,841,330
_1736
Ga0059261_1737: Ga0059261_1737 - hypothetical protein, at 1,841,375 to 1,841,782
_1737
Ga0059261_1738: Ga0059261_1738 - Ti-type conjugative transfer relaxase TraA, at 1,841,792 to 1,844,608
_1738
Position (kb)
1839
1840
1841
1842 Strain fitness (log2 ratio)
-2
-1
0
1 at 1838.867 kb on + strand at 1838.867 kb on + strand at 1838.868 kb on - strand at 1838.868 kb on - strand at 1838.869 kb on + strand at 1838.869 kb on + strand at 1838.869 kb on + strand at 1838.919 kb on - strand at 1841.647 kb on + strand, within Ga0059261_1737 at 1841.647 kb on + strand, within Ga0059261_1737 at 1841.648 kb on - strand, within Ga0059261_1737 at 1841.648 kb on - strand, within Ga0059261_1737 at 1841.648 kb on - strand, within Ga0059261_1737 at 1841.648 kb on - strand, within Ga0059261_1737 at 1841.649 kb on + strand, within Ga0059261_1737 at 1841.649 kb on + strand, within Ga0059261_1737 at 1841.650 kb on - strand, within Ga0059261_1737 at 1841.650 kb on - strand, within Ga0059261_1737 at 1841.650 kb on - strand, within Ga0059261_1737 at 1841.650 kb on - strand, within Ga0059261_1737 at 1841.708 kb on - strand, within Ga0059261_1737 at 1841.793 kb on + strand at 1841.793 kb on + strand at 1841.830 kb on + strand at 1841.830 kb on + strand at 1841.830 kb on + strand at 1841.830 kb on + strand at 1841.831 kb on - strand at 1841.831 kb on - strand at 1841.831 kb on - strand at 1841.982 kb on + strand at 1841.982 kb on + strand at 1841.982 kb on + strand at 1841.982 kb on + strand at 1841.983 kb on - strand at 1841.983 kb on - strand at 1841.983 kb on - strand at 1841.983 kb on - strand at 1841.983 kb on - strand at 1841.983 kb on - strand at 1841.983 kb on - strand at 1841.983 kb on - strand at 1842.017 kb on + strand at 1842.017 kb on + strand at 1842.017 kb on + strand at 1842.018 kb on - strand at 1842.018 kb on - strand at 1842.018 kb on - strand at 1842.282 kb on + strand, within Ga0059261_1738 at 1842.282 kb on + strand, within Ga0059261_1738 at 1842.282 kb on + strand, within Ga0059261_1738 at 1842.283 kb on - strand, within Ga0059261_1738 at 1842.283 kb on - strand, within Ga0059261_1738 at 1842.283 kb on - strand, within Ga0059261_1738 at 1842.283 kb on - strand, within Ga0059261_1738 at 1842.283 kb on - strand, within Ga0059261_1738 at 1842.300 kb on + strand, within Ga0059261_1738 at 1842.300 kb on + strand, within Ga0059261_1738 at 1842.300 kb on + strand, within Ga0059261_1738 at 1842.300 kb on + strand, within Ga0059261_1738 at 1842.300 kb on + strand, within Ga0059261_1738 at 1842.300 kb on + strand, within Ga0059261_1738
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml remove 1,838,867 + -0.5 1,838,867 + +0.2 1,838,868 - +0.1 1,838,868 - +0.5 1,838,869 + +0.1 1,838,869 + +0.2 1,838,869 + +1.7 1,838,919 - -0.2 1,841,647 + Ga0059261_1737 0.67 -0.2 1,841,647 + Ga0059261_1737 0.67 -0.1 1,841,648 - Ga0059261_1737 0.67 -0.9 1,841,648 - Ga0059261_1737 0.67 -0.2 1,841,648 - Ga0059261_1737 0.67 +0.8 1,841,648 - Ga0059261_1737 0.67 -0.9 1,841,649 + Ga0059261_1737 0.67 -0.4 1,841,649 + Ga0059261_1737 0.67 +0.6 1,841,650 - Ga0059261_1737 0.67 +0.7 1,841,650 - Ga0059261_1737 0.67 -0.0 1,841,650 - Ga0059261_1737 0.67 +0.5 1,841,650 - Ga0059261_1737 0.67 -0.4 1,841,708 - Ga0059261_1737 0.82 -0.0 1,841,793 + -0.1 1,841,793 + +0.3 1,841,830 + -0.2 1,841,830 + -0.1 1,841,830 + -0.2 1,841,830 + -0.0 1,841,831 - +0.3 1,841,831 - +0.5 1,841,831 - +0.3 1,841,982 + +0.1 1,841,982 + +0.0 1,841,982 + -0.9 1,841,982 + +0.2 1,841,983 - +0.9 1,841,983 - -1.5 1,841,983 - -0.2 1,841,983 - -0.9 1,841,983 - -0.4 1,841,983 - -0.0 1,841,983 - +0.2 1,841,983 - +0.1 1,842,017 + +0.1 1,842,017 + +0.1 1,842,017 + +0.0 1,842,018 - +0.1 1,842,018 - -0.1 1,842,018 - +0.2 1,842,282 + Ga0059261_1738 0.17 -0.5 1,842,282 + Ga0059261_1738 0.17 -0.1 1,842,282 + Ga0059261_1738 0.17 -0.2 1,842,283 - Ga0059261_1738 0.17 +0.2 1,842,283 - Ga0059261_1738 0.17 +0.1 1,842,283 - Ga0059261_1738 0.17 +0.3 1,842,283 - Ga0059261_1738 0.17 +0.1 1,842,283 - Ga0059261_1738 0.17 -0.5 1,842,300 + Ga0059261_1738 0.18 -1.8 1,842,300 + Ga0059261_1738 0.18 +0.0 1,842,300 + Ga0059261_1738 0.18 -0.0 1,842,300 + Ga0059261_1738 0.18 -1.9 1,842,300 + Ga0059261_1738 0.18 +0.1 1,842,300 + Ga0059261_1738 0.18 -1.1
Or see this region's nucleotide sequence