Experiment: benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0610 and Ga0059261_0611 are separated by 345 nucleotides Ga0059261_0611 and Ga0059261_0612 are separated by 100 nucleotides Ga0059261_0612 and Ga0059261_0613 are separated by 27 nucleotides
Ga0059261_0610: Ga0059261_0610 - HpcH/HpaI aldolase/citrate lyase family, at 645,079 to 645,891
_0610
Ga0059261_0611: Ga0059261_0611 - Peptidase family M23, at 646,237 to 646,695
_0611
Ga0059261_0612: Ga0059261_0612 - RNA polymerase sigma factor, sigma-70 family, at 646,796 to 647,311
_0612
Ga0059261_0613: Ga0059261_0613 - FecR family protein, at 647,339 to 648,304
_0613
Position (kb) 646
647
648 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 645.837 kb on - strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.920 kb on + strand at 645.921 kb on - strand at 645.921 kb on - strand at 645.921 kb on - strand at 645.921 kb on - strand at 645.960 kb on + strand at 646.079 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on + strand at 646.688 kb on - strand at 646.689 kb on - strand at 646.689 kb on - strand at 646.689 kb on - strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.699 kb on + strand at 646.700 kb on - strand at 646.700 kb on - strand at 646.700 kb on - strand at 646.724 kb on + strand at 646.724 kb on + strand at 646.724 kb on + strand at 646.725 kb on - strand at 646.970 kb on + strand, within Ga0059261_0612 at 646.970 kb on + strand, within Ga0059261_0612 at 646.970 kb on + strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 646.971 kb on - strand, within Ga0059261_0612 at 647.338 kb on + strand at 648.044 kb on - strand, within Ga0059261_0613 at 648.080 kb on + strand, within Ga0059261_0613 at 648.080 kb on + strand, within Ga0059261_0613 at 648.081 kb on - strand, within Ga0059261_0613 at 648.083 kb on + strand at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand, within Ga0059261_0613 at 648.083 kb on + strand at 648.083 kb on + strand, within Ga0059261_0613 at 648.173 kb on + strand, within Ga0059261_0613 at 648.173 kb on + strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.174 kb on - strand, within Ga0059261_0613 at 648.175 kb on + strand at 648.176 kb on - strand, within Ga0059261_0613 at 648.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml remove 645,837 - -0.3 645,920 + +0.4 645,920 + +0.3 645,920 + -0.1 645,920 + -0.1 645,920 + -0.4 645,920 + +0.2 645,921 - -0.3 645,921 - +0.2 645,921 - -0.1 645,921 - +0.5 645,960 + +0.2 646,079 + -0.4 646,688 + -0.9 646,688 + -0.3 646,688 + +0.9 646,688 + -0.5 646,688 - +0.3 646,689 - +0.4 646,689 - +0.2 646,689 - +0.3 646,699 + +0.4 646,699 + +0.3 646,699 + +1.5 646,699 + -0.1 646,699 + -0.7 646,699 + -1.4 646,700 - +0.1 646,700 - +0.6 646,700 - +0.1 646,724 + +2.5 646,724 + +0.5 646,724 + +0.3 646,725 - +0.7 646,970 + Ga0059261_0612 0.34 -0.3 646,970 + Ga0059261_0612 0.34 -0.2 646,970 + Ga0059261_0612 0.34 +0.9 646,971 - Ga0059261_0612 0.34 +0.3 646,971 - Ga0059261_0612 0.34 +0.2 646,971 - Ga0059261_0612 0.34 +1.1 646,971 - Ga0059261_0612 0.34 -0.6 646,971 - Ga0059261_0612 0.34 -0.1 647,338 + -3.1 648,044 - Ga0059261_0613 0.73 -0.8 648,080 + Ga0059261_0613 0.77 -1.4 648,080 + Ga0059261_0613 0.77 -0.8 648,081 - Ga0059261_0613 0.77 -0.8 648,083 + -0.1 648,083 + Ga0059261_0613 0.77 -0.7 648,083 + Ga0059261_0613 0.77 -1.5 648,083 + Ga0059261_0613 0.77 -2.4 648,083 + -1.3 648,083 + Ga0059261_0613 0.77 -1.5 648,173 + Ga0059261_0613 0.86 -2.1 648,173 + Ga0059261_0613 0.86 -1.1 648,174 - Ga0059261_0613 0.86 -1.5 648,174 - Ga0059261_0613 0.86 -1.3 648,174 - Ga0059261_0613 0.86 -1.5 648,175 + -0.5 648,176 - Ga0059261_0613 0.87 +0.5 648,274 - -0.8
Or see this region's nucleotide sequence