Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0488

Experiment: benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0486 and Ga0059261_0487 are separated by 109 nucleotidesGa0059261_0487 and Ga0059261_0488 are separated by 113 nucleotidesGa0059261_0488 and Ga0059261_0489 are separated by 13 nucleotidesGa0059261_0489 and Ga0059261_0490 are separated by 27 nucleotides Ga0059261_0486: Ga0059261_0486 - TonB-dependent siderophore receptor, at 478,057 to 480,237 _0486 Ga0059261_0487: Ga0059261_0487 - Superoxide dismutase, at 480,347 to 481,060 _0487 Ga0059261_0488: Ga0059261_0488 - MerC mercury resistance protein, at 481,174 to 481,551 _0488 Ga0059261_0489: Ga0059261_0489 - Fe2+/Zn2+ uptake regulation proteins, at 481,565 to 482,011 _0489 Ga0059261_0490: Ga0059261_0490 - Peptidase S46, at 482,039 to 484,165 _0490 Position (kb) 481 482Strain fitness (log2 ratio) -2 -1 0 1 2 3at 480.311 kb on + strandat 480.311 kb on + strandat 480.311 kb on + strandat 480.311 kb on + strandat 480.423 kb on + strand, within Ga0059261_0487at 480.423 kb on + strandat 480.424 kb on - strand, within Ga0059261_0487at 480.453 kb on + strand, within Ga0059261_0487at 480.453 kb on + strand, within Ga0059261_0487at 480.453 kb on + strand, within Ga0059261_0487at 480.454 kb on - strand, within Ga0059261_0487at 480.454 kb on - strand, within Ga0059261_0487at 480.454 kb on - strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strand, within Ga0059261_0487at 480.456 kb on + strandat 480.456 kb on + strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.457 kb on - strand, within Ga0059261_0487at 480.609 kb on - strand, within Ga0059261_0487at 480.867 kb on + strandat 480.867 kb on + strand, within Ga0059261_0487at 480.867 kb on + strand, within Ga0059261_0487at 480.867 kb on + strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.868 kb on - strand, within Ga0059261_0487at 480.943 kb on - strand, within Ga0059261_0487at 481.048 kb on + strandat 481.048 kb on + strandat 481.049 kb on - strandat 481.049 kb on - strandat 481.080 kb on - strandat 481.080 kb on - strandat 481.080 kb on - strandat 481.274 kb on + strand, within Ga0059261_0488at 481.274 kb on + strand, within Ga0059261_0488at 481.274 kb on + strand, within Ga0059261_0488at 481.274 kb on + strand, within Ga0059261_0488at 481.275 kb on - strand, within Ga0059261_0488at 481.275 kb on - strand, within Ga0059261_0488at 481.378 kb on + strand, within Ga0059261_0488at 481.379 kb on - strand, within Ga0059261_0488at 481.397 kb on + strand, within Ga0059261_0488at 481.397 kb on + strand, within Ga0059261_0488at 481.397 kb on + strand, within Ga0059261_0488at 481.397 kb on + strand, within Ga0059261_0488at 481.398 kb on - strand, within Ga0059261_0488at 481.532 kb on + strandat 481.532 kb on + strandat 481.532 kb on + strandat 481.532 kb on + strandat 481.532 kb on + strandat 481.533 kb on - strandat 481.533 kb on - strandat 481.533 kb on - strandat 481.533 kb on - strandat 481.533 kb on - strandat 481.550 kb on - strandat 481.550 kb on - strandat 481.550 kb on - strandat 481.644 kb on + strand, within Ga0059261_0489at 481.644 kb on + strand, within Ga0059261_0489at 481.644 kb on + strand, within Ga0059261_0489at 481.644 kb on + strand, within Ga0059261_0489at 481.644 kb on + strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.645 kb on - strand, within Ga0059261_0489at 481.652 kb on + strand, within Ga0059261_0489at 481.652 kb on + strand, within Ga0059261_0489at 481.652 kb on + strand, within Ga0059261_0489at 481.652 kb on + strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.653 kb on - strand, within Ga0059261_0489at 481.674 kb on - strand, within Ga0059261_0489at 481.733 kb on + strand, within Ga0059261_0489at 481.734 kb on - strand, within Ga0059261_0489at 481.734 kb on - strand, within Ga0059261_0489at 481.734 kb on - strand, within Ga0059261_0489at 481.859 kb on - strand, within Ga0059261_0489at 481.944 kb on - strand, within Ga0059261_0489at 481.944 kb on - strandat 481.944 kb on - strand, within Ga0059261_0489at 481.944 kb on - strand, within Ga0059261_0489at 481.944 kb on - strand, within Ga0059261_0489at 482.014 kb on + strandat 482.015 kb on - strandat 482.088 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.106 kb on + strandat 482.107 kb on - strandat 482.107 kb on - strandat 482.107 kb on - strandat 482.107 kb on - strandat 482.107 kb on - strandat 482.107 kb on - strandat 482.107 kb on - strandat 482.180 kb on - strandat 482.251 kb on + strandat 482.252 kb on - strand, within Ga0059261_0490at 482.252 kb on - strand, within Ga0059261_0490at 482.284 kb on + strand, within Ga0059261_0490at 482.302 kb on + strand, within Ga0059261_0490at 482.303 kb on - strand, within Ga0059261_0490at 482.303 kb on - strand, within Ga0059261_0490at 482.303 kb on - strand, within Ga0059261_0490at 482.303 kb on - strand, within Ga0059261_0490at 482.304 kb on + strand, within Ga0059261_0490at 482.304 kb on + strand, within Ga0059261_0490at 482.304 kb on + strand, within Ga0059261_0490at 482.304 kb on + strand, within Ga0059261_0490at 482.313 kb on + strand, within Ga0059261_0490at 482.313 kb on + strand, within Ga0059261_0490at 482.313 kb on + strand, within Ga0059261_0490at 482.314 kb on - strand, within Ga0059261_0490at 482.314 kb on - strand, within Ga0059261_0490at 482.314 kb on - strandat 482.314 kb on - strand, within Ga0059261_0490at 482.314 kb on - strand, within Ga0059261_0490at 482.314 kb on - strand, within Ga0059261_0490at 482.314 kb on - strand, within Ga0059261_0490at 482.454 kb on + strand, within Ga0059261_0490at 482.454 kb on + strandat 482.454 kb on + strand, within Ga0059261_0490at 482.454 kb on + strand, within Ga0059261_0490at 482.454 kb on + strand, within Ga0059261_0490at 482.454 kb on + strand, within Ga0059261_0490at 482.455 kb on - strand, within Ga0059261_0490at 482.455 kb on - strand, within Ga0059261_0490at 482.455 kb on - strand, within Ga0059261_0490at 482.488 kb on - strand, within Ga0059261_0490at 482.488 kb on - strand, within Ga0059261_0490at 482.514 kb on + strand, within Ga0059261_0490at 482.514 kb on + strand, within Ga0059261_0490at 482.515 kb on - strand, within Ga0059261_0490at 482.515 kb on - strand, within Ga0059261_0490at 482.515 kb on - strand, within Ga0059261_0490at 482.521 kb on + strandat 482.521 kb on + strand, within Ga0059261_0490at 482.521 kb on + strand, within Ga0059261_0490at 482.521 kb on + strand, within Ga0059261_0490at 482.521 kb on + strand, within Ga0059261_0490at 482.522 kb on - strand, within Ga0059261_0490at 482.522 kb on - strand, within Ga0059261_0490at 482.522 kb on - strand, within Ga0059261_0490at 482.522 kb on - strand, within Ga0059261_0490at 482.533 kb on + strand, within Ga0059261_0490at 482.533 kb on + strand, within Ga0059261_0490at 482.533 kb on + strand, within Ga0059261_0490at 482.533 kb on + strand, within Ga0059261_0490at 482.533 kb on + strand, within Ga0059261_0490at 482.534 kb on - strand, within Ga0059261_0490at 482.534 kb on - strandat 482.534 kb on - strand, within Ga0059261_0490at 482.534 kb on - strand, within Ga0059261_0490at 482.534 kb on - strandat 482.535 kb on + strand, within Ga0059261_0490at 482.535 kb on + strand, within Ga0059261_0490at 482.535 kb on + strand, within Ga0059261_0490at 482.535 kb on + strand, within Ga0059261_0490at 482.535 kb on + strand, within Ga0059261_0490at 482.535 kb on + strand, within Ga0059261_0490at 482.535 kb on + strand, within Ga0059261_0490at 482.536 kb on - strand, within Ga0059261_0490at 482.536 kb on - strand, within Ga0059261_0490at 482.536 kb on - strand, within Ga0059261_0490at 482.536 kb on - strand, within Ga0059261_0490at 482.536 kb on - strand, within Ga0059261_0490

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml
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480,311 + -0.1
480,311 + +0.4
480,311 + -0.5
480,311 + +0.9
480,423 + Ga0059261_0487 0.11 -0.6
480,423 + -0.1
480,424 - Ga0059261_0487 0.11 +0.5
480,453 + Ga0059261_0487 0.15 -0.5
480,453 + Ga0059261_0487 0.15 -0.4
480,453 + Ga0059261_0487 0.15 -0.2
480,454 - Ga0059261_0487 0.15 +0.6
480,454 - Ga0059261_0487 0.15 +0.2
480,454 - Ga0059261_0487 0.15 +0.0
480,456 + Ga0059261_0487 0.15 -0.6
480,456 + Ga0059261_0487 0.15 -0.2
480,456 + Ga0059261_0487 0.15 -1.4
480,456 + Ga0059261_0487 0.15 -0.1
480,456 + Ga0059261_0487 0.15 -0.2
480,456 + Ga0059261_0487 0.15 -2.1
480,456 + Ga0059261_0487 0.15 +0.5
480,456 + Ga0059261_0487 0.15 -0.7
480,456 + +2.5
480,456 + Ga0059261_0487 0.15 +1.2
480,457 - Ga0059261_0487 0.15 -0.3
480,457 - Ga0059261_0487 0.15 -1.0
480,457 - Ga0059261_0487 0.15 +1.1
480,457 - Ga0059261_0487 0.15 +0.5
480,457 - Ga0059261_0487 0.15 -0.0
480,457 - Ga0059261_0487 0.15 -0.4
480,457 - Ga0059261_0487 0.15 +0.2
480,457 - Ga0059261_0487 0.15 +0.3
480,609 - Ga0059261_0487 0.37 -0.5
480,867 + +1.5
480,867 + Ga0059261_0487 0.73 +0.3
480,867 + Ga0059261_0487 0.73 -0.1
480,867 + Ga0059261_0487 0.73 -1.0
480,868 - Ga0059261_0487 0.73 -0.2
480,868 - Ga0059261_0487 0.73 -0.2
480,868 - Ga0059261_0487 0.73 -1.1
480,868 - Ga0059261_0487 0.73 +0.5
480,868 - Ga0059261_0487 0.73 +0.0
480,868 - Ga0059261_0487 0.73 +1.1
480,868 - Ga0059261_0487 0.73 -0.7
480,868 - Ga0059261_0487 0.73 -0.3
480,943 - Ga0059261_0487 0.83 +0.1
481,048 + -0.1
481,048 + -0.3
481,049 - -1.3
481,049 - -0.3
481,080 - +0.2
481,080 - +0.3
481,080 - -0.3
481,274 + Ga0059261_0488 0.26 +0.6
481,274 + Ga0059261_0488 0.26 +0.2
481,274 + Ga0059261_0488 0.26 +1.0
481,274 + Ga0059261_0488 0.26 +0.0
481,275 - Ga0059261_0488 0.27 -1.0
481,275 - Ga0059261_0488 0.27 +0.7
481,378 + Ga0059261_0488 0.54 -0.2
481,379 - Ga0059261_0488 0.54 +0.7
481,397 + Ga0059261_0488 0.59 +0.7
481,397 + Ga0059261_0488 0.59 +0.0
481,397 + Ga0059261_0488 0.59 +1.2
481,397 + Ga0059261_0488 0.59 -1.1
481,398 - Ga0059261_0488 0.59 -0.2
481,532 + +0.2
481,532 + +0.4
481,532 + -0.3
481,532 + -0.4
481,532 + +0.0
481,533 - +0.3
481,533 - +0.2
481,533 - -0.8
481,533 - -0.3
481,533 - -0.5
481,550 - +0.3
481,550 - +2.8
481,550 - +0.5
481,644 + Ga0059261_0489 0.18 +0.7
481,644 + Ga0059261_0489 0.18 -0.3
481,644 + Ga0059261_0489 0.18 +0.4
481,644 + Ga0059261_0489 0.18 -0.2
481,644 + Ga0059261_0489 0.18 +0.3
481,645 - Ga0059261_0489 0.18 -0.5
481,645 - Ga0059261_0489 0.18 -0.3
481,645 - Ga0059261_0489 0.18 -0.3
481,645 - Ga0059261_0489 0.18 +0.4
481,645 - Ga0059261_0489 0.18 -1.3
481,645 - Ga0059261_0489 0.18 +0.1
481,645 - Ga0059261_0489 0.18 -1.7
481,645 - Ga0059261_0489 0.18 +0.2
481,645 - Ga0059261_0489 0.18 +0.9
481,645 - Ga0059261_0489 0.18 +0.2
481,645 - Ga0059261_0489 0.18 -0.1
481,645 - Ga0059261_0489 0.18 -0.4
481,645 - Ga0059261_0489 0.18 +0.2
481,645 - Ga0059261_0489 0.18 +0.4
481,652 + Ga0059261_0489 0.19 +0.6
481,652 + Ga0059261_0489 0.19 +0.6
481,652 + Ga0059261_0489 0.19 -0.1
481,652 + Ga0059261_0489 0.19 -0.3
481,653 - Ga0059261_0489 0.20 +0.6
481,653 - Ga0059261_0489 0.20 -0.2
481,653 - Ga0059261_0489 0.20 +0.0
481,653 - Ga0059261_0489 0.20 -0.4
481,653 - Ga0059261_0489 0.20 +0.0
481,653 - Ga0059261_0489 0.20 +0.3
481,653 - Ga0059261_0489 0.20 -0.8
481,653 - Ga0059261_0489 0.20 +0.8
481,653 - Ga0059261_0489 0.20 -0.6
481,674 - Ga0059261_0489 0.24 -1.8
481,733 + Ga0059261_0489 0.38 -0.1
481,734 - Ga0059261_0489 0.38 -0.3
481,734 - Ga0059261_0489 0.38 +1.2
481,734 - Ga0059261_0489 0.38 +0.4
481,859 - Ga0059261_0489 0.66 +0.3
481,944 - Ga0059261_0489 0.85 -0.5
481,944 - -1.1
481,944 - Ga0059261_0489 0.85 -0.1
481,944 - Ga0059261_0489 0.85 +1.0
481,944 - Ga0059261_0489 0.85 +0.3
482,014 + -0.1
482,015 - -0.7
482,088 + +0.2
482,106 + -0.7
482,106 + +0.3
482,106 + +0.1
482,106 + -1.2
482,106 + -0.8
482,106 + -0.5
482,106 + +0.2
482,106 + +0.4
482,106 + -0.3
482,106 + -0.7
482,107 - +1.3
482,107 - -0.3
482,107 - +0.3
482,107 - -0.5
482,107 - -0.0
482,107 - +0.2
482,107 - +0.3
482,180 - -0.2
482,251 + +0.7
482,252 - Ga0059261_0490 0.10 +0.4
482,252 - Ga0059261_0490 0.10 -0.0
482,284 + Ga0059261_0490 0.12 -0.4
482,302 + Ga0059261_0490 0.12 +0.2
482,303 - Ga0059261_0490 0.12 +0.7
482,303 - Ga0059261_0490 0.12 -0.5
482,303 - Ga0059261_0490 0.12 +0.9
482,303 - Ga0059261_0490 0.12 -0.1
482,304 + Ga0059261_0490 0.12 +2.1
482,304 + Ga0059261_0490 0.12 +0.2
482,304 + Ga0059261_0490 0.12 +0.1
482,304 + Ga0059261_0490 0.12 +0.2
482,313 + Ga0059261_0490 0.13 -0.3
482,313 + Ga0059261_0490 0.13 +0.0
482,313 + Ga0059261_0490 0.13 -0.4
482,314 - Ga0059261_0490 0.13 +0.3
482,314 - Ga0059261_0490 0.13 -0.3
482,314 - -0.8
482,314 - Ga0059261_0490 0.13 -0.2
482,314 - Ga0059261_0490 0.13 +0.1
482,314 - Ga0059261_0490 0.13 -0.7
482,314 - Ga0059261_0490 0.13 -0.1
482,454 + Ga0059261_0490 0.20 +0.1
482,454 + +1.5
482,454 + Ga0059261_0490 0.20 -1.7
482,454 + Ga0059261_0490 0.20 +0.9
482,454 + Ga0059261_0490 0.20 -0.7
482,454 + Ga0059261_0490 0.20 +0.5
482,455 - Ga0059261_0490 0.20 +0.0
482,455 - Ga0059261_0490 0.20 -0.2
482,455 - Ga0059261_0490 0.20 +0.7
482,488 - Ga0059261_0490 0.21 +0.3
482,488 - Ga0059261_0490 0.21 +0.2
482,514 + Ga0059261_0490 0.22 -0.0
482,514 + Ga0059261_0490 0.22 +0.7
482,515 - Ga0059261_0490 0.22 -0.8
482,515 - Ga0059261_0490 0.22 +1.2
482,515 - Ga0059261_0490 0.22 -0.9
482,521 + +1.1
482,521 + Ga0059261_0490 0.23 +0.2
482,521 + Ga0059261_0490 0.23 +1.5
482,521 + Ga0059261_0490 0.23 -0.7
482,521 + Ga0059261_0490 0.23 +0.0
482,522 - Ga0059261_0490 0.23 +0.2
482,522 - Ga0059261_0490 0.23 -0.2
482,522 - Ga0059261_0490 0.23 -0.4
482,522 - Ga0059261_0490 0.23 -0.5
482,533 + Ga0059261_0490 0.23 -0.5
482,533 + Ga0059261_0490 0.23 +1.7
482,533 + Ga0059261_0490 0.23 -0.2
482,533 + Ga0059261_0490 0.23 -0.1
482,533 + Ga0059261_0490 0.23 -0.8
482,534 - Ga0059261_0490 0.23 -0.1
482,534 - -0.5
482,534 - Ga0059261_0490 0.23 -1.6
482,534 - Ga0059261_0490 0.23 +0.3
482,534 - +0.5
482,535 + Ga0059261_0490 0.23 -0.6
482,535 + Ga0059261_0490 0.23 -1.3
482,535 + Ga0059261_0490 0.23 -0.2
482,535 + Ga0059261_0490 0.23 -0.5
482,535 + Ga0059261_0490 0.23 -0.3
482,535 + Ga0059261_0490 0.23 -0.8
482,535 + Ga0059261_0490 0.23 -0.5
482,536 - Ga0059261_0490 0.23 +0.9
482,536 - Ga0059261_0490 0.23 +0.2
482,536 - Ga0059261_0490 0.23 -0.9
482,536 - Ga0059261_0490 0.23 -0.8
482,536 - Ga0059261_0490 0.23 -2.0

Or see this region's nucleotide sequence