Experiment: benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0300 and Ga0059261_0301 are separated by 185 nucleotides Ga0059261_0301 and Ga0059261_0302 are separated by 27 nucleotides Ga0059261_0302 and Ga0059261_0303 are separated by 49 nucleotides
Ga0059261_0300: Ga0059261_0300 - diguanylate cyclase (GGDEF) domain, at 284,594 to 286,126
_0300
Ga0059261_0301: Ga0059261_0301 - hypothetical protein, at 286,312 to 286,719
_0301
Ga0059261_0302: Ga0059261_0302 - hypothetical protein, at 286,747 to 287,184
_0302
Ga0059261_0303: Ga0059261_0303 - Predicted membrane protein, at 287,234 to 288,484
_0303
Position (kb) 286
287 Strain fitness (log2 ratio) -1
0
1
2 at 285.444 kb on + strand, within Ga0059261_0300 at 285.444 kb on + strand, within Ga0059261_0300 at 285.444 kb on + strand, within Ga0059261_0300 at 285.444 kb on + strand, within Ga0059261_0300 at 285.444 kb on + strand, within Ga0059261_0300 at 285.444 kb on + strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.445 kb on - strand, within Ga0059261_0300 at 285.447 kb on + strand, within Ga0059261_0300 at 285.448 kb on - strand, within Ga0059261_0300 at 285.465 kb on + strand, within Ga0059261_0300 at 285.465 kb on + strand, within Ga0059261_0300 at 285.465 kb on + strand, within Ga0059261_0300 at 285.466 kb on - strand, within Ga0059261_0300 at 285.466 kb on - strand, within Ga0059261_0300 at 285.753 kb on + strand, within Ga0059261_0300 at 285.753 kb on + strand, within Ga0059261_0300 at 285.753 kb on + strand, within Ga0059261_0300 at 285.754 kb on - strand, within Ga0059261_0300 at 285.754 kb on - strand, within Ga0059261_0300 at 285.967 kb on + strand at 286.138 kb on + strand at 286.138 kb on + strand at 286.138 kb on + strand at 286.139 kb on - strand at 286.139 kb on - strand at 286.139 kb on - strand at 286.148 kb on + strand at 286.148 kb on + strand at 286.149 kb on - strand at 286.149 kb on - strand at 286.152 kb on + strand at 286.152 kb on + strand at 286.153 kb on - strand at 286.153 kb on - strand at 286.153 kb on - strand at 286.153 kb on - strand at 286.153 kb on - strand at 286.163 kb on + strand at 286.191 kb on + strand at 286.258 kb on + strand at 286.324 kb on + strand at 286.389 kb on + strand, within Ga0059261_0301 at 286.390 kb on - strand, within Ga0059261_0301 at 286.431 kb on - strand, within Ga0059261_0301 at 286.599 kb on + strand, within Ga0059261_0301 at 286.599 kb on + strand, within Ga0059261_0301 at 286.599 kb on + strand, within Ga0059261_0301 at 286.600 kb on - strand, within Ga0059261_0301 at 286.602 kb on - strand, within Ga0059261_0301 at 286.602 kb on - strand, within Ga0059261_0301 at 286.602 kb on - strand, within Ga0059261_0301 at 286.611 kb on + strand, within Ga0059261_0301 at 286.611 kb on + strand, within Ga0059261_0301 at 286.611 kb on + strand, within Ga0059261_0301 at 286.612 kb on - strand, within Ga0059261_0301 at 286.612 kb on - strand, within Ga0059261_0301 at 286.612 kb on - strand, within Ga0059261_0301 at 286.612 kb on - strand, within Ga0059261_0301 at 286.612 kb on - strand, within Ga0059261_0301 at 286.721 kb on + strand at 286.722 kb on - strand at 286.722 kb on - strand at 286.722 kb on - strand at 286.870 kb on + strand, within Ga0059261_0302 at 286.870 kb on + strand, within Ga0059261_0302 at 286.871 kb on - strand, within Ga0059261_0302 at 286.871 kb on - strand, within Ga0059261_0302 at 287.023 kb on + strand, within Ga0059261_0302 at 287.038 kb on + strand, within Ga0059261_0302 at 287.038 kb on + strand, within Ga0059261_0302 at 287.039 kb on - strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.053 kb on + strand, within Ga0059261_0302 at 287.054 kb on - strand, within Ga0059261_0302 at 287.054 kb on - strand, within Ga0059261_0302 at 287.054 kb on - strand, within Ga0059261_0302 at 287.054 kb on - strand, within Ga0059261_0302 at 287.054 kb on - strand, within Ga0059261_0302 at 287.054 kb on - strand, within Ga0059261_0302 at 287.054 kb on - strand, within Ga0059261_0302 at 287.078 kb on + strand, within Ga0059261_0302 at 287.078 kb on + strand, within Ga0059261_0302 at 287.079 kb on - strand, within Ga0059261_0302 at 287.182 kb on + strand at 287.182 kb on + strand at 287.183 kb on - strand at 287.183 kb on - strand at 287.183 kb on - strand at 287.205 kb on + strand at 287.205 kb on + strand at 287.205 kb on + strand at 287.206 kb on - strand at 287.219 kb on + strand at 287.219 kb on + strand at 287.219 kb on + strand at 287.257 kb on + strand at 287.257 kb on + strand at 287.257 kb on + strand at 287.257 kb on + strand at 287.258 kb on - strand at 287.273 kb on - strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.345 kb on + strand at 287.346 kb on - strand at 287.346 kb on - strand at 287.346 kb on - strand at 287.346 kb on - strand at 287.346 kb on - strand at 287.347 kb on + strand at 287.347 kb on + strand at 287.347 kb on + strand at 287.347 kb on + strand at 287.347 kb on + strand at 287.347 kb on + strand at 287.347 kb on + strand at 287.347 kb on + strand at 287.348 kb on - strand at 287.348 kb on - strand at 287.364 kb on - strand, within Ga0059261_0303 at 287.522 kb on + strand, within Ga0059261_0303 at 287.523 kb on - strand, within Ga0059261_0303 at 287.600 kb on + strand, within Ga0059261_0303 at 287.600 kb on + strand, within Ga0059261_0303 at 287.600 kb on + strand, within Ga0059261_0303 at 287.600 kb on + strand, within Ga0059261_0303 at 287.601 kb on - strand, within Ga0059261_0303 at 287.601 kb on - strand, within Ga0059261_0303 at 287.601 kb on - strand, within Ga0059261_0303 at 287.601 kb on - strand, within Ga0059261_0303
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.145 mg/ml remove 285,444 + Ga0059261_0300 0.55 -0.1 285,444 + Ga0059261_0300 0.55 -0.7 285,444 + Ga0059261_0300 0.55 +0.1 285,444 + Ga0059261_0300 0.55 +0.0 285,444 + Ga0059261_0300 0.55 -0.2 285,444 + Ga0059261_0300 0.55 -0.1 285,445 - Ga0059261_0300 0.56 -0.7 285,445 - Ga0059261_0300 0.56 +0.9 285,445 - Ga0059261_0300 0.56 -0.7 285,445 - Ga0059261_0300 0.56 +0.1 285,445 - Ga0059261_0300 0.56 +0.2 285,445 - Ga0059261_0300 0.56 +0.4 285,445 - Ga0059261_0300 0.56 +0.2 285,445 - Ga0059261_0300 0.56 -1.2 285,445 - Ga0059261_0300 0.56 +0.1 285,447 + Ga0059261_0300 0.56 +1.0 285,448 - Ga0059261_0300 0.56 +0.2 285,465 + Ga0059261_0300 0.57 -0.2 285,465 + Ga0059261_0300 0.57 -0.1 285,465 + Ga0059261_0300 0.57 -0.5 285,466 - Ga0059261_0300 0.57 +0.2 285,466 - Ga0059261_0300 0.57 -0.5 285,753 + Ga0059261_0300 0.76 +0.3 285,753 + Ga0059261_0300 0.76 -0.0 285,753 + Ga0059261_0300 0.76 +0.2 285,754 - Ga0059261_0300 0.76 -0.1 285,754 - Ga0059261_0300 0.76 +1.8 285,967 + +0.5 286,138 + -1.1 286,138 + -0.4 286,138 + -0.1 286,139 - +0.6 286,139 - -0.0 286,139 - -0.7 286,148 + -0.7 286,148 + +0.1 286,149 - +0.6 286,149 - -0.1 286,152 + -0.3 286,152 + -0.4 286,153 - +0.3 286,153 - +0.7 286,153 - +0.3 286,153 - -0.7 286,153 - -0.2 286,163 + +0.2 286,191 + -0.1 286,258 + -0.2 286,324 + +0.0 286,389 + Ga0059261_0301 0.19 +0.5 286,390 - Ga0059261_0301 0.19 -0.1 286,431 - Ga0059261_0301 0.29 +0.3 286,599 + Ga0059261_0301 0.70 +0.4 286,599 + Ga0059261_0301 0.70 -0.5 286,599 + Ga0059261_0301 0.70 -0.3 286,600 - Ga0059261_0301 0.71 +0.7 286,602 - Ga0059261_0301 0.71 -0.0 286,602 - Ga0059261_0301 0.71 -0.1 286,602 - Ga0059261_0301 0.71 +0.7 286,611 + Ga0059261_0301 0.73 -0.3 286,611 + Ga0059261_0301 0.73 +1.0 286,611 + Ga0059261_0301 0.73 -0.7 286,612 - Ga0059261_0301 0.74 +0.4 286,612 - Ga0059261_0301 0.74 -0.0 286,612 - Ga0059261_0301 0.74 +0.1 286,612 - Ga0059261_0301 0.74 +0.7 286,612 - Ga0059261_0301 0.74 +0.1 286,721 + -0.2 286,722 - +0.2 286,722 - +1.1 286,722 - +0.5 286,870 + Ga0059261_0302 0.28 -0.7 286,870 + Ga0059261_0302 0.28 +0.2 286,871 - Ga0059261_0302 0.28 -0.3 286,871 - Ga0059261_0302 0.28 +0.0 287,023 + Ga0059261_0302 0.63 +0.1 287,038 + Ga0059261_0302 0.66 +0.3 287,038 + Ga0059261_0302 0.66 +0.0 287,039 - Ga0059261_0302 0.67 -0.0 287,053 + Ga0059261_0302 0.70 -0.2 287,053 + Ga0059261_0302 0.70 -0.3 287,053 + Ga0059261_0302 0.70 +0.1 287,053 + Ga0059261_0302 0.70 -0.2 287,053 + Ga0059261_0302 0.70 +0.1 287,053 + Ga0059261_0302 0.70 -0.1 287,053 + Ga0059261_0302 0.70 -0.3 287,053 + Ga0059261_0302 0.70 +1.9 287,053 + Ga0059261_0302 0.70 +0.2 287,054 - Ga0059261_0302 0.70 -1.0 287,054 - Ga0059261_0302 0.70 +0.1 287,054 - Ga0059261_0302 0.70 -0.1 287,054 - Ga0059261_0302 0.70 -0.1 287,054 - Ga0059261_0302 0.70 -1.3 287,054 - Ga0059261_0302 0.70 +0.2 287,054 - Ga0059261_0302 0.70 -0.4 287,078 + Ga0059261_0302 0.76 +0.3 287,078 + Ga0059261_0302 0.76 +0.1 287,079 - Ga0059261_0302 0.76 -0.3 287,182 + -1.3 287,182 + -0.1 287,183 - -1.3 287,183 - -0.2 287,183 - +0.0 287,205 + +0.6 287,205 + -0.3 287,205 + +0.6 287,206 - +0.2 287,219 + +0.3 287,219 + +0.1 287,219 + +1.0 287,257 + -0.2 287,257 + -0.7 287,257 + -0.0 287,257 + -0.3 287,258 - -0.1 287,273 - +0.7 287,345 + +0.6 287,345 + +0.7 287,345 + -0.2 287,345 + +0.0 287,345 + -1.0 287,345 + -0.0 287,345 + +0.2 287,346 - +0.7 287,346 - -0.9 287,346 - +0.3 287,346 - -1.0 287,346 - +0.2 287,347 + -0.8 287,347 + -0.8 287,347 + +0.2 287,347 + -0.5 287,347 + +0.1 287,347 + -0.6 287,347 + -0.1 287,347 + -0.7 287,348 - -0.2 287,348 - -0.1 287,364 - Ga0059261_0303 0.10 -0.5 287,522 + Ga0059261_0303 0.23 -0.2 287,523 - Ga0059261_0303 0.23 -0.4 287,600 + Ga0059261_0303 0.29 -0.3 287,600 + Ga0059261_0303 0.29 +0.3 287,600 + Ga0059261_0303 0.29 -0.1 287,600 + Ga0059261_0303 0.29 +0.1 287,601 - Ga0059261_0303 0.29 +0.2 287,601 - Ga0059261_0303 0.29 -1.3 287,601 - Ga0059261_0303 0.29 -0.7 287,601 - Ga0059261_0303 0.29 -0.5
Or see this region's nucleotide sequence