Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29800 and AO356_29805 are separated by 57 nucleotides AO356_29805 and AO356_29810 overlap by 4 nucleotides AO356_29810 and AO356_29815 are separated by 32 nucleotides
AO356_29800: AO356_29800 - AraC family transcriptional regulator, at 6,929,036 to 6,929,836
_29800
AO356_29805: AO356_29805 - FAD-dependent oxidoreductase, at 6,929,894 to 6,931,318
_29805
AO356_29810: AO356_29810 - cupin, at 6,931,315 to 6,931,656
_29810
AO356_29815: AO356_29815 - spermidine/putrescine ABC transporter substrate-binding protein, at 6,931,689 to 6,932,774
_29815
Position (kb)
6929
6930
6931
6932 Strain fitness (log2 ratio)
-1
0
1 at 6928.918 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.932 kb on + strand at 6928.933 kb on - strand at 6928.936 kb on + strand at 6928.936 kb on + strand at 6928.936 kb on + strand at 6928.937 kb on - strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.938 kb on + strand at 6928.939 kb on - strand at 6928.939 kb on - strand at 6928.970 kb on + strand at 6928.971 kb on - strand at 6929.147 kb on + strand, within AO356_29800 at 6929.148 kb on - strand, within AO356_29800 at 6929.148 kb on - strand, within AO356_29800 at 6929.165 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.216 kb on + strand, within AO356_29800 at 6929.217 kb on - strand, within AO356_29800 at 6929.217 kb on - strand, within AO356_29800 at 6929.253 kb on - strand, within AO356_29800 at 6929.370 kb on + strand, within AO356_29800 at 6929.392 kb on + strand, within AO356_29800 at 6929.394 kb on + strand, within AO356_29800 at 6929.394 kb on + strand, within AO356_29800 at 6929.402 kb on + strand, within AO356_29800 at 6929.516 kb on + strand, within AO356_29800 at 6929.606 kb on + strand, within AO356_29800 at 6929.606 kb on + strand, within AO356_29800 at 6929.607 kb on - strand at 6929.639 kb on + strand, within AO356_29800 at 6929.646 kb on - strand, within AO356_29800 at 6929.967 kb on - strand at 6930.029 kb on + strand at 6930.030 kb on - strand at 6930.030 kb on - strand at 6930.030 kb on - strand at 6930.030 kb on - strand at 6930.030 kb on - strand at 6930.032 kb on + strand at 6930.166 kb on - strand, within AO356_29805 at 6930.405 kb on + strand, within AO356_29805 at 6930.405 kb on + strand, within AO356_29805 at 6930.405 kb on + strand, within AO356_29805 at 6930.406 kb on - strand, within AO356_29805 at 6930.423 kb on - strand, within AO356_29805 at 6930.474 kb on + strand, within AO356_29805 at 6930.510 kb on + strand, within AO356_29805 at 6930.511 kb on - strand, within AO356_29805 at 6930.614 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.699 kb on + strand, within AO356_29805 at 6930.700 kb on - strand, within AO356_29805 at 6930.700 kb on - strand, within AO356_29805 at 6930.761 kb on + strand, within AO356_29805 at 6930.761 kb on + strand, within AO356_29805 at 6930.762 kb on - strand, within AO356_29805 at 6930.887 kb on - strand, within AO356_29805 at 6931.033 kb on - strand, within AO356_29805 at 6931.557 kb on - strand, within AO356_29810 at 6931.557 kb on - strand, within AO356_29810 at 6931.557 kb on - strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.560 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.616 kb on + strand, within AO356_29810 at 6931.617 kb on - strand, within AO356_29810 at 6931.617 kb on - strand, within AO356_29810 at 6931.639 kb on + strand at 6931.639 kb on + strand at 6931.640 kb on - strand at 6931.678 kb on + strand at 6931.679 kb on - strand at 6931.785 kb on + strand at 6931.786 kb on - strand at 6931.842 kb on + strand, within AO356_29815 at 6931.852 kb on - strand, within AO356_29815 at 6931.903 kb on - strand, within AO356_29815 at 6931.903 kb on - strand, within AO356_29815 at 6932.128 kb on + strand, within AO356_29815 at 6932.129 kb on - strand, within AO356_29815 at 6932.129 kb on - strand, within AO356_29815 at 6932.241 kb on + strand, within AO356_29815 at 6932.241 kb on + strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.242 kb on - strand, within AO356_29815 at 6932.302 kb on + strand, within AO356_29815 at 6932.303 kb on - strand, within AO356_29815
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,928,918 + -1.0 6,928,932 + +0.1 6,928,932 + +0.2 6,928,932 + +0.1 6,928,932 + +0.4 6,928,932 + +0.4 6,928,933 - -0.9 6,928,936 + +1.7 6,928,936 + -0.3 6,928,936 + +0.9 6,928,937 - -0.1 6,928,938 + +0.0 6,928,938 + +0.2 6,928,938 + +0.1 6,928,938 + +0.5 6,928,938 + +0.3 6,928,938 + +0.1 6,928,939 - +0.1 6,928,939 - +1.2 6,928,970 + +0.1 6,928,971 - -0.9 6,929,147 + AO356_29800 0.14 -0.5 6,929,148 - AO356_29800 0.14 -0.0 6,929,148 - AO356_29800 0.14 -1.5 6,929,165 + AO356_29800 0.16 -0.2 6,929,216 + AO356_29800 0.22 +0.2 6,929,216 + AO356_29800 0.22 +0.3 6,929,216 + AO356_29800 0.22 +0.8 6,929,217 - AO356_29800 0.23 +0.8 6,929,217 - AO356_29800 0.23 +0.2 6,929,253 - AO356_29800 0.27 -1.5 6,929,370 + AO356_29800 0.42 -0.4 6,929,392 + AO356_29800 0.44 +0.1 6,929,394 + AO356_29800 0.45 +0.1 6,929,394 + AO356_29800 0.45 +0.2 6,929,402 + AO356_29800 0.46 -0.9 6,929,516 + AO356_29800 0.60 +0.3 6,929,606 + AO356_29800 0.71 +1.6 6,929,606 + AO356_29800 0.71 -0.5 6,929,607 - +0.6 6,929,639 + AO356_29800 0.75 -1.0 6,929,646 - AO356_29800 0.76 -0.5 6,929,967 - +0.4 6,930,029 + -0.9 6,930,030 - -0.0 6,930,030 - +0.1 6,930,030 - +0.4 6,930,030 - -0.4 6,930,030 - +0.0 6,930,032 + +0.2 6,930,166 - AO356_29805 0.19 -0.3 6,930,405 + AO356_29805 0.36 +0.2 6,930,405 + AO356_29805 0.36 +0.0 6,930,405 + AO356_29805 0.36 +0.2 6,930,406 - AO356_29805 0.36 -0.2 6,930,423 - AO356_29805 0.37 +0.6 6,930,474 + AO356_29805 0.41 -0.0 6,930,510 + AO356_29805 0.43 +1.2 6,930,511 - AO356_29805 0.43 +0.8 6,930,614 + AO356_29805 0.51 -0.2 6,930,699 + AO356_29805 0.56 +0.5 6,930,699 + AO356_29805 0.56 +1.1 6,930,699 + AO356_29805 0.56 +0.2 6,930,700 - AO356_29805 0.57 +1.2 6,930,700 - AO356_29805 0.57 +0.6 6,930,761 + AO356_29805 0.61 +0.8 6,930,761 + AO356_29805 0.61 +0.2 6,930,762 - AO356_29805 0.61 +0.6 6,930,887 - AO356_29805 0.70 +0.0 6,931,033 - AO356_29805 0.80 +0.1 6,931,557 - AO356_29810 0.71 +0.8 6,931,557 - AO356_29810 0.71 +0.1 6,931,557 - AO356_29810 0.71 -0.3 6,931,560 + AO356_29810 0.72 -0.6 6,931,560 + AO356_29810 0.72 -0.6 6,931,560 + AO356_29810 0.72 -1.1 6,931,616 + AO356_29810 0.88 +0.0 6,931,616 + AO356_29810 0.88 +0.2 6,931,616 + AO356_29810 0.88 -0.7 6,931,617 - AO356_29810 0.88 -0.9 6,931,617 - AO356_29810 0.88 -0.6 6,931,639 + -0.3 6,931,639 + +1.6 6,931,640 - +0.7 6,931,678 + +0.3 6,931,679 - +0.7 6,931,785 + +1.7 6,931,786 - +0.8 6,931,842 + AO356_29815 0.14 +0.7 6,931,852 - AO356_29815 0.15 -0.3 6,931,903 - AO356_29815 0.20 +0.1 6,931,903 - AO356_29815 0.20 +0.5 6,932,128 + AO356_29815 0.40 +0.9 6,932,129 - AO356_29815 0.41 +0.1 6,932,129 - AO356_29815 0.41 +0.1 6,932,241 + AO356_29815 0.51 -0.2 6,932,241 + AO356_29815 0.51 +0.2 6,932,242 - AO356_29815 0.51 -0.9 6,932,242 - AO356_29815 0.51 +0.6 6,932,242 - AO356_29815 0.51 +1.0 6,932,302 + AO356_29815 0.56 +0.8 6,932,303 - AO356_29815 0.57 +0.3
Or see this region's nucleotide sequence