Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29670 and AO356_29675 are separated by 72 nucleotides AO356_29675 and AO356_29680 are separated by 10 nucleotides AO356_29680 and AO356_29685 are separated by 39 nucleotides
AO356_29670: AO356_29670 - argininosuccinate lyase, at 6,902,083 to 6,903,510
_29670
AO356_29675: AO356_29675 - ABC transporter permease, at 6,903,583 to 6,904,461
_29675
AO356_29680: AO356_29680 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 6,904,472 to 6,905,236
_29680
AO356_29685: AO356_29685 - ABC transporter substrate-binding protein, at 6,905,276 to 6,906,100
_29685
Position (kb)
6904
6905
6906 Strain fitness (log2 ratio)
-1
0
1 at 6903.655 kb on + strand at 6903.767 kb on - strand, within AO356_29675 at 6903.925 kb on + strand, within AO356_29675 at 6903.926 kb on - strand, within AO356_29675 at 6903.926 kb on - strand, within AO356_29675 at 6903.928 kb on - strand, within AO356_29675 at 6904.096 kb on + strand, within AO356_29675 at 6904.227 kb on + strand, within AO356_29675 at 6904.504 kb on + strand at 6904.508 kb on + strand at 6905.178 kb on + strand at 6905.181 kb on + strand at 6905.181 kb on + strand at 6905.181 kb on + strand at 6905.184 kb on + strand at 6905.454 kb on - strand, within AO356_29685 at 6905.642 kb on + strand, within AO356_29685 at 6905.906 kb on + strand, within AO356_29685 at 6905.906 kb on + strand, within AO356_29685 at 6905.906 kb on + strand, within AO356_29685 at 6905.907 kb on - strand, within AO356_29685 at 6905.907 kb on - strand, within AO356_29685 at 6905.907 kb on - strand, within AO356_29685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,903,655 + -0.1 6,903,767 - AO356_29675 0.21 -0.2 6,903,925 + AO356_29675 0.39 -0.2 6,903,926 - AO356_29675 0.39 +0.1 6,903,926 - AO356_29675 0.39 -0.5 6,903,928 - AO356_29675 0.39 +0.5 6,904,096 + AO356_29675 0.58 -0.8 6,904,227 + AO356_29675 0.73 +0.6 6,904,504 + -0.3 6,904,508 + +0.4 6,905,178 + -0.1 6,905,181 + +0.3 6,905,181 + +0.3 6,905,181 + +1.2 6,905,184 + +0.3 6,905,454 - AO356_29685 0.22 -0.6 6,905,642 + AO356_29685 0.44 -0.1 6,905,906 + AO356_29685 0.76 +0.2 6,905,906 + AO356_29685 0.76 +0.0 6,905,906 + AO356_29685 0.76 +0.2 6,905,907 - AO356_29685 0.76 -0.1 6,905,907 - AO356_29685 0.76 -0.4 6,905,907 - AO356_29685 0.76 -0.3
Or see this region's nucleotide sequence