Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29585

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29580 and AO356_29585 are separated by 433 nucleotidesAO356_29585 and AO356_29590 are separated by 244 nucleotidesAO356_29590 and AO356_29595 are separated by 146 nucleotides AO356_29580: AO356_29580 - hypothetical protein, at 6,880,351 to 6,882,033 _29580 AO356_29585: AO356_29585 - alpha/beta hydrolase, at 6,882,467 to 6,883,237 _29585 AO356_29590: AO356_29590 - ester cyclase, at 6,883,482 to 6,883,874 _29590 AO356_29595: AO356_29595 - trehalose synthase, at 6,884,021 to 6,886,087 _29595 Position (kb) 6882 6883 6884Strain fitness (log2 ratio) -1 0 1at 6881.576 kb on - strand, within AO356_29580at 6881.576 kb on - strand, within AO356_29580at 6881.807 kb on + strand, within AO356_29580at 6881.808 kb on - strand, within AO356_29580at 6881.964 kb on - strandat 6881.992 kb on + strandat 6881.992 kb on + strandat 6881.992 kb on + strandat 6881.993 kb on - strandat 6881.993 kb on - strandat 6881.994 kb on + strandat 6881.994 kb on + strandat 6881.994 kb on + strandat 6881.995 kb on - strandat 6882.057 kb on + strandat 6882.057 kb on + strandat 6882.057 kb on + strandat 6882.058 kb on - strandat 6882.453 kb on - strandat 6882.738 kb on - strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.797 kb on + strand, within AO356_29585at 6882.923 kb on + strand, within AO356_29585at 6882.923 kb on + strand, within AO356_29585at 6882.923 kb on + strand, within AO356_29585at 6882.924 kb on - strand, within AO356_29585at 6882.924 kb on - strand, within AO356_29585at 6882.937 kb on + strand, within AO356_29585at 6883.077 kb on + strand, within AO356_29585at 6883.077 kb on + strand, within AO356_29585at 6883.077 kb on + strand, within AO356_29585at 6883.094 kb on - strand, within AO356_29585at 6883.236 kb on - strandat 6883.429 kb on + strandat 6883.436 kb on + strandat 6883.506 kb on + strandat 6883.506 kb on + strandat 6883.507 kb on - strandat 6883.508 kb on + strandat 6883.515 kb on + strandat 6883.516 kb on - strandat 6883.791 kb on + strand, within AO356_29590at 6883.791 kb on + strand, within AO356_29590at 6883.838 kb on + strandat 6883.843 kb on + strandat 6883.938 kb on + strandat 6883.939 kb on - strandat 6883.971 kb on + strandat 6883.972 kb on - strandat 6883.972 kb on - strandat 6884.039 kb on - strandat 6884.039 kb on - strandat 6884.039 kb on - strandat 6884.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,881,576 - AO356_29580 0.73 -0.2
6,881,576 - AO356_29580 0.73 +1.1
6,881,807 + AO356_29580 0.87 +0.5
6,881,808 - AO356_29580 0.87 +0.2
6,881,964 - -0.3
6,881,992 + -0.4
6,881,992 + +0.2
6,881,992 + -1.3
6,881,993 - +1.1
6,881,993 - +1.3
6,881,994 + +0.1
6,881,994 + -0.2
6,881,994 + +1.2
6,881,995 - -0.0
6,882,057 + +0.3
6,882,057 + -0.2
6,882,057 + +1.0
6,882,058 - +0.6
6,882,453 - +0.0
6,882,738 - AO356_29585 0.35 -0.4
6,882,797 + AO356_29585 0.43 -0.5
6,882,797 + AO356_29585 0.43 -0.8
6,882,797 + AO356_29585 0.43 +0.1
6,882,797 + AO356_29585 0.43 -0.2
6,882,797 + AO356_29585 0.43 -0.1
6,882,797 + AO356_29585 0.43 -0.7
6,882,923 + AO356_29585 0.59 +1.3
6,882,923 + AO356_29585 0.59 +0.2
6,882,923 + AO356_29585 0.59 -0.3
6,882,924 - AO356_29585 0.59 -0.2
6,882,924 - AO356_29585 0.59 -0.2
6,882,937 + AO356_29585 0.61 -0.8
6,883,077 + AO356_29585 0.79 -0.2
6,883,077 + AO356_29585 0.79 +0.1
6,883,077 + AO356_29585 0.79 +0.4
6,883,094 - AO356_29585 0.81 -0.0
6,883,236 - -0.0
6,883,429 + +0.6
6,883,436 + +0.3
6,883,506 + +0.5
6,883,506 + -0.6
6,883,507 - +0.4
6,883,508 + -0.0
6,883,515 + -1.1
6,883,516 - -0.9
6,883,791 + AO356_29590 0.79 -0.3
6,883,791 + AO356_29590 0.79 -0.9
6,883,838 + -0.3
6,883,843 + +1.0
6,883,938 + -0.1
6,883,939 - +0.5
6,883,971 + -0.8
6,883,972 - -0.8
6,883,972 - +1.0
6,884,039 - +0.1
6,884,039 - +0.4
6,884,039 - +0.2
6,884,104 + +0.4

Or see this region's nucleotide sequence