Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29485 and AO356_29490 are separated by 152 nucleotides AO356_29490 and AO356_29495 are separated by 64 nucleotides
AO356_29485: AO356_29485 - LysR family transcriptional regulator, at 6,859,185 to 6,860,078
_29485
AO356_29490: AO356_29490 - ArsR family transcriptional regulator, at 6,860,231 to 6,860,533
_29490
AO356_29495: AO356_29495 - NADPH:quinone oxidoreductase, at 6,860,598 to 6,861,572
_29495
Position (kb)
6860
6861 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6859.386 kb on + strand, within AO356_29485 at 6859.386 kb on + strand, within AO356_29485 at 6859.386 kb on + strand, within AO356_29485 at 6859.386 kb on + strand, within AO356_29485 at 6859.386 kb on + strand, within AO356_29485 at 6859.702 kb on - strand, within AO356_29485 at 6859.702 kb on - strand, within AO356_29485 at 6859.705 kb on + strand, within AO356_29485 at 6859.706 kb on - strand, within AO356_29485 at 6859.841 kb on + strand, within AO356_29485 at 6859.842 kb on - strand, within AO356_29485 at 6860.002 kb on + strand at 6860.047 kb on + strand at 6860.048 kb on - strand at 6860.163 kb on + strand at 6860.185 kb on + strand at 6860.185 kb on + strand at 6860.185 kb on + strand at 6860.186 kb on - strand at 6860.239 kb on - strand at 6860.239 kb on - strand at 6860.471 kb on + strand, within AO356_29490 at 6860.471 kb on + strand, within AO356_29490 at 6860.474 kb on + strand, within AO356_29490 at 6860.475 kb on - strand, within AO356_29490 at 6860.542 kb on + strand at 6860.543 kb on - strand at 6860.595 kb on - strand at 6860.595 kb on - strand at 6860.597 kb on + strand at 6860.597 kb on + strand at 6860.598 kb on - strand at 6860.598 kb on - strand at 6860.598 kb on - strand at 6860.598 kb on - strand at 6860.615 kb on + strand at 6860.615 kb on + strand at 6860.616 kb on - strand at 6860.616 kb on - strand at 6860.856 kb on + strand, within AO356_29495 at 6860.889 kb on + strand, within AO356_29495 at 6860.890 kb on - strand, within AO356_29495 at 6860.890 kb on - strand, within AO356_29495 at 6861.177 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.192 kb on + strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.193 kb on - strand, within AO356_29495 at 6861.372 kb on + strand, within AO356_29495 at 6861.373 kb on - strand, within AO356_29495 at 6861.469 kb on - strand, within AO356_29495
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,859,386 + AO356_29485 0.22 -1.5 6,859,386 + AO356_29485 0.22 -0.2 6,859,386 + AO356_29485 0.22 +2.0 6,859,386 + AO356_29485 0.22 +0.5 6,859,386 + AO356_29485 0.22 +0.1 6,859,702 - AO356_29485 0.58 +0.0 6,859,702 - AO356_29485 0.58 +0.6 6,859,705 + AO356_29485 0.58 -0.4 6,859,706 - AO356_29485 0.58 +0.2 6,859,841 + AO356_29485 0.73 -0.4 6,859,842 - AO356_29485 0.73 -0.7 6,860,002 + +0.4 6,860,047 + +0.8 6,860,048 - +0.4 6,860,163 + +0.6 6,860,185 + +0.4 6,860,185 + -0.5 6,860,185 + +0.5 6,860,186 - -0.1 6,860,239 - +0.3 6,860,239 - +0.7 6,860,471 + AO356_29490 0.79 +0.2 6,860,471 + AO356_29490 0.79 -1.6 6,860,474 + AO356_29490 0.80 -0.1 6,860,475 - AO356_29490 0.81 -1.9 6,860,542 + +0.5 6,860,543 - -0.1 6,860,595 - +0.9 6,860,595 - +0.7 6,860,597 + -0.4 6,860,597 + -0.6 6,860,598 - -1.0 6,860,598 - +0.7 6,860,598 - +1.0 6,860,598 - -0.3 6,860,615 + +0.6 6,860,615 + -0.6 6,860,616 - -0.4 6,860,616 - +0.8 6,860,856 + AO356_29495 0.26 +0.6 6,860,889 + AO356_29495 0.30 -1.1 6,860,890 - AO356_29495 0.30 +0.5 6,860,890 - AO356_29495 0.30 -0.5 6,861,177 + AO356_29495 0.59 -0.4 6,861,192 + AO356_29495 0.61 +0.3 6,861,192 + AO356_29495 0.61 +0.2 6,861,192 + AO356_29495 0.61 +1.1 6,861,193 - AO356_29495 0.61 -0.9 6,861,193 - AO356_29495 0.61 +0.9 6,861,193 - AO356_29495 0.61 +0.8 6,861,372 + AO356_29495 0.79 -1.3 6,861,373 - AO356_29495 0.79 -0.4 6,861,469 - AO356_29495 0.89 +0.2
Or see this region's nucleotide sequence