Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27455 and AO356_27460 are separated by 123 nucleotides AO356_27460 and AO356_27465 are separated by 60 nucleotides
AO356_27455: AO356_27455 - LysR family transcriptional regulator, at 6,255,915 to 6,256,901
_27455
AO356_27460: AO356_27460 - galactonate dehydratase, at 6,257,025 to 6,258,572
_27460
AO356_27465: AO356_27465 - ketoglutarate semialdehyde dehydrogenase, at 6,258,633 to 6,260,213
_27465
Position (kb)
6257
6258
6259 Strain fitness (log2 ratio)
-1
0
1 at 6256.056 kb on - strand, within AO356_27455 at 6256.056 kb on - strand, within AO356_27455 at 6256.148 kb on - strand, within AO356_27455 at 6256.164 kb on - strand, within AO356_27455 at 6256.234 kb on + strand, within AO356_27455 at 6256.235 kb on - strand, within AO356_27455 at 6256.539 kb on + strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.540 kb on - strand, within AO356_27455 at 6256.764 kb on + strand, within AO356_27455 at 6256.772 kb on + strand, within AO356_27455 at 6256.773 kb on - strand, within AO356_27455 at 6256.817 kb on + strand at 6256.817 kb on + strand at 6256.934 kb on + strand at 6256.957 kb on + strand at 6256.958 kb on - strand at 6256.987 kb on + strand at 6257.172 kb on - strand at 6257.251 kb on + strand, within AO356_27460 at 6257.251 kb on + strand, within AO356_27460 at 6257.252 kb on - strand, within AO356_27460 at 6257.409 kb on + strand, within AO356_27460 at 6257.409 kb on + strand, within AO356_27460 at 6257.409 kb on + strand, within AO356_27460 at 6257.410 kb on - strand, within AO356_27460 at 6257.418 kb on - strand, within AO356_27460 at 6257.418 kb on - strand, within AO356_27460 at 6257.424 kb on - strand, within AO356_27460 at 6257.424 kb on - strand, within AO356_27460 at 6257.424 kb on - strand, within AO356_27460 at 6257.508 kb on + strand, within AO356_27460 at 6257.974 kb on + strand, within AO356_27460 at 6257.976 kb on + strand, within AO356_27460 at 6257.977 kb on - strand, within AO356_27460 at 6257.977 kb on - strand, within AO356_27460 at 6258.064 kb on - strand, within AO356_27460 at 6258.074 kb on + strand, within AO356_27460 at 6258.074 kb on + strand, within AO356_27460 at 6258.075 kb on - strand, within AO356_27460 at 6258.075 kb on - strand, within AO356_27460 at 6258.088 kb on + strand, within AO356_27460 at 6258.196 kb on - strand, within AO356_27460 at 6258.201 kb on + strand, within AO356_27460 at 6258.253 kb on - strand, within AO356_27460 at 6258.330 kb on + strand, within AO356_27460 at 6258.330 kb on + strand, within AO356_27460 at 6258.331 kb on - strand, within AO356_27460 at 6258.602 kb on + strand at 6258.603 kb on - strand at 6258.603 kb on - strand at 6258.731 kb on - strand at 6258.735 kb on + strand at 6258.950 kb on + strand, within AO356_27465 at 6259.002 kb on + strand, within AO356_27465 at 6259.069 kb on - strand, within AO356_27465 at 6259.109 kb on + strand, within AO356_27465 at 6259.180 kb on + strand, within AO356_27465 at 6259.287 kb on + strand, within AO356_27465 at 6259.288 kb on - strand, within AO356_27465 at 6259.288 kb on - strand, within AO356_27465 at 6259.288 kb on - strand, within AO356_27465 at 6259.315 kb on + strand, within AO356_27465 at 6259.315 kb on + strand, within AO356_27465 at 6259.315 kb on + strand, within AO356_27465 at 6259.316 kb on - strand, within AO356_27465 at 6259.316 kb on - strand, within AO356_27465 at 6259.383 kb on - strand, within AO356_27465 at 6259.552 kb on + strand, within AO356_27465
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,256,056 - AO356_27455 0.14 -0.1 6,256,056 - AO356_27455 0.14 -1.0 6,256,148 - AO356_27455 0.24 +0.8 6,256,164 - AO356_27455 0.25 +0.6 6,256,234 + AO356_27455 0.32 -0.5 6,256,235 - AO356_27455 0.32 +0.3 6,256,539 + AO356_27455 0.63 +0.3 6,256,540 - AO356_27455 0.63 -0.5 6,256,540 - AO356_27455 0.63 -0.4 6,256,540 - AO356_27455 0.63 -1.0 6,256,764 + AO356_27455 0.86 -1.3 6,256,772 + AO356_27455 0.87 -0.4 6,256,773 - AO356_27455 0.87 -0.2 6,256,817 + -0.6 6,256,817 + +0.3 6,256,934 + +0.2 6,256,957 + -0.1 6,256,958 - -0.5 6,256,987 + -0.6 6,257,172 - -1.1 6,257,251 + AO356_27460 0.15 +0.3 6,257,251 + AO356_27460 0.15 -0.0 6,257,252 - AO356_27460 0.15 +0.7 6,257,409 + AO356_27460 0.25 +0.1 6,257,409 + AO356_27460 0.25 +0.6 6,257,409 + AO356_27460 0.25 +0.2 6,257,410 - AO356_27460 0.25 -0.3 6,257,418 - AO356_27460 0.25 -1.3 6,257,418 - AO356_27460 0.25 -0.9 6,257,424 - AO356_27460 0.26 +1.0 6,257,424 - AO356_27460 0.26 -0.4 6,257,424 - AO356_27460 0.26 -0.8 6,257,508 + AO356_27460 0.31 +0.3 6,257,974 + AO356_27460 0.61 -0.8 6,257,976 + AO356_27460 0.61 -0.5 6,257,977 - AO356_27460 0.61 -0.2 6,257,977 - AO356_27460 0.61 -0.2 6,258,064 - AO356_27460 0.67 +0.2 6,258,074 + AO356_27460 0.68 +0.4 6,258,074 + AO356_27460 0.68 -0.6 6,258,075 - AO356_27460 0.68 -1.0 6,258,075 - AO356_27460 0.68 -0.1 6,258,088 + AO356_27460 0.69 +1.3 6,258,196 - AO356_27460 0.76 -0.3 6,258,201 + AO356_27460 0.76 -0.2 6,258,253 - AO356_27460 0.79 +0.3 6,258,330 + AO356_27460 0.84 +0.5 6,258,330 + AO356_27460 0.84 +0.4 6,258,331 - AO356_27460 0.84 +0.1 6,258,602 + -0.6 6,258,603 - -0.3 6,258,603 - -0.8 6,258,731 - +0.6 6,258,735 + +1.2 6,258,950 + AO356_27465 0.20 -0.1 6,259,002 + AO356_27465 0.23 +0.4 6,259,069 - AO356_27465 0.28 -0.3 6,259,109 + AO356_27465 0.30 +0.1 6,259,180 + AO356_27465 0.35 +0.4 6,259,287 + AO356_27465 0.41 +0.5 6,259,288 - AO356_27465 0.41 +0.3 6,259,288 - AO356_27465 0.41 -0.5 6,259,288 - AO356_27465 0.41 +1.6 6,259,315 + AO356_27465 0.43 +0.3 6,259,315 + AO356_27465 0.43 -0.2 6,259,315 + AO356_27465 0.43 -0.4 6,259,316 - AO356_27465 0.43 +1.4 6,259,316 - AO356_27465 0.43 -0.5 6,259,383 - AO356_27465 0.47 -0.3 6,259,552 + AO356_27465 0.58 +0.2
Or see this region's nucleotide sequence