Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16715 and AO356_16720 are separated by 186 nucleotides AO356_16720 and AO356_16725 are separated by 294 nucleotides AO356_16725 and AO356_16730 overlap by 8 nucleotides
AO356_16715: AO356_16715 - thioredoxin reductase, at 3,770,167 to 3,771,129
_16715
AO356_16720: AO356_16720 - 4-aminobutyrate aminotransferase, at 3,771,316 to 3,772,566
_16720
AO356_16725: AO356_16725 - HopJ type III effector protein, at 3,772,861 to 3,773,199
_16725
AO356_16730: AO356_16730 - cell division protein DedD, at 3,773,192 to 3,773,488
_16730
Position (kb)
3771
3772
3773 Strain fitness (log2 ratio)
-2
-1
0
1 at 3771.169 kb on - strand at 3771.179 kb on + strand at 3771.180 kb on - strand at 3771.180 kb on - strand at 3771.228 kb on + strand at 3771.228 kb on + strand at 3771.228 kb on + strand at 3771.228 kb on + strand at 3771.229 kb on - strand at 3771.557 kb on + strand, within AO356_16720 at 3771.557 kb on + strand, within AO356_16720 at 3771.557 kb on + strand, within AO356_16720 at 3771.558 kb on - strand, within AO356_16720 at 3771.558 kb on - strand, within AO356_16720 at 3771.565 kb on + strand, within AO356_16720 at 3771.701 kb on + strand, within AO356_16720 at 3771.701 kb on + strand, within AO356_16720 at 3771.702 kb on - strand, within AO356_16720 at 3771.702 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.130 kb on + strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.367 kb on + strand, within AO356_16720 at 3772.367 kb on + strand, within AO356_16720 at 3772.466 kb on + strand at 3772.467 kb on - strand at 3772.467 kb on - strand at 3772.467 kb on - strand at 3772.467 kb on - strand at 3772.604 kb on + strand at 3772.604 kb on + strand at 3772.605 kb on - strand at 3772.605 kb on - strand at 3772.605 kb on - strand at 3772.637 kb on + strand at 3772.637 kb on + strand at 3772.638 kb on - strand at 3772.638 kb on - strand at 3772.657 kb on + strand at 3772.687 kb on - strand at 3772.852 kb on + strand at 3772.929 kb on + strand, within AO356_16725 at 3772.929 kb on + strand, within AO356_16725 at 3772.930 kb on - strand, within AO356_16725 at 3773.109 kb on - strand, within AO356_16725 at 3773.184 kb on + strand at 3773.253 kb on + strand, within AO356_16730 at 3773.254 kb on - strand, within AO356_16730 at 3773.254 kb on - strand, within AO356_16730 at 3773.274 kb on + strand, within AO356_16730 at 3773.286 kb on + strand, within AO356_16730 at 3773.286 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.350 kb on - strand, within AO356_16730 at 3773.350 kb on - strand, within AO356_16730 at 3773.543 kb on + strand at 3773.565 kb on + strand at 3773.565 kb on + strand at 3773.565 kb on + strand at 3773.565 kb on + strand at 3773.566 kb on - strand at 3773.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,771,169 - +0.2 3,771,179 + -0.1 3,771,180 - -1.3 3,771,180 - -0.2 3,771,228 + -0.1 3,771,228 + +0.0 3,771,228 + +0.7 3,771,228 + +0.3 3,771,229 - -0.5 3,771,557 + AO356_16720 0.19 -1.6 3,771,557 + AO356_16720 0.19 +1.5 3,771,557 + AO356_16720 0.19 +0.9 3,771,558 - AO356_16720 0.19 +0.4 3,771,558 - AO356_16720 0.19 +0.4 3,771,565 + AO356_16720 0.20 -0.2 3,771,701 + AO356_16720 0.31 +0.7 3,771,701 + AO356_16720 0.31 +0.1 3,771,702 - AO356_16720 0.31 +0.6 3,771,702 - AO356_16720 0.31 +1.4 3,772,095 - AO356_16720 0.62 +0.1 3,772,095 - AO356_16720 0.62 -0.3 3,772,095 - AO356_16720 0.62 +0.2 3,772,095 - AO356_16720 0.62 -0.6 3,772,095 - AO356_16720 0.62 +0.9 3,772,095 - AO356_16720 0.62 +1.2 3,772,130 + AO356_16720 0.65 -0.3 3,772,131 - AO356_16720 0.65 -0.1 3,772,131 - AO356_16720 0.65 -0.9 3,772,131 - AO356_16720 0.65 +0.5 3,772,131 - AO356_16720 0.65 -0.0 3,772,131 - AO356_16720 0.65 +1.3 3,772,337 + AO356_16720 0.82 -0.0 3,772,337 + AO356_16720 0.82 -0.2 3,772,337 + AO356_16720 0.82 +0.8 3,772,337 + AO356_16720 0.82 -0.6 3,772,337 + AO356_16720 0.82 +0.2 3,772,337 + AO356_16720 0.82 +0.2 3,772,337 + AO356_16720 0.82 -0.3 3,772,337 + AO356_16720 0.82 +0.1 3,772,338 - AO356_16720 0.82 +1.0 3,772,338 - AO356_16720 0.82 +0.9 3,772,338 - AO356_16720 0.82 +0.6 3,772,338 - AO356_16720 0.82 -0.6 3,772,338 - AO356_16720 0.82 +0.4 3,772,338 - AO356_16720 0.82 +1.4 3,772,338 - AO356_16720 0.82 -1.1 3,772,338 - AO356_16720 0.82 +0.9 3,772,338 - AO356_16720 0.82 -0.2 3,772,338 - AO356_16720 0.82 +0.1 3,772,338 - AO356_16720 0.82 -0.4 3,772,367 + AO356_16720 0.84 -0.4 3,772,367 + AO356_16720 0.84 +0.0 3,772,466 + +0.6 3,772,467 - -1.3 3,772,467 - -1.2 3,772,467 - +0.7 3,772,467 - -1.8 3,772,604 + +0.1 3,772,604 + +0.3 3,772,605 - -0.5 3,772,605 - +0.7 3,772,605 - -0.2 3,772,637 + +0.2 3,772,637 + -0.8 3,772,638 - -0.1 3,772,638 - +0.4 3,772,657 + -0.2 3,772,687 - +0.6 3,772,852 + +0.2 3,772,929 + AO356_16725 0.20 -0.1 3,772,929 + AO356_16725 0.20 -0.5 3,772,930 - AO356_16725 0.20 +0.3 3,773,109 - AO356_16725 0.73 +0.2 3,773,184 + -0.5 3,773,253 + AO356_16730 0.21 -2.3 3,773,254 - AO356_16730 0.21 +0.1 3,773,254 - AO356_16730 0.21 -0.9 3,773,274 + AO356_16730 0.28 -1.3 3,773,286 + AO356_16730 0.32 +0.1 3,773,286 + AO356_16730 0.32 +0.1 3,773,349 + AO356_16730 0.53 -0.1 3,773,349 + AO356_16730 0.53 -0.0 3,773,349 + AO356_16730 0.53 +0.1 3,773,349 + AO356_16730 0.53 -0.1 3,773,349 + AO356_16730 0.53 +1.1 3,773,349 + AO356_16730 0.53 +1.0 3,773,350 - AO356_16730 0.53 +1.2 3,773,350 - AO356_16730 0.53 -0.7 3,773,543 + -0.4 3,773,565 + +0.2 3,773,565 + +1.0 3,773,565 + -2.3 3,773,565 + +0.5 3,773,566 - +0.3 3,773,566 - +0.2
Or see this region's nucleotide sequence