Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16390

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16385 and AO356_16390 are separated by 61 nucleotidesAO356_16390 and AO356_16395 are separated by 103 nucleotides AO356_16385: AO356_16385 - transcriptional regulator, at 3,701,533 to 3,702,447 _16385 AO356_16390: AO356_16390 - tRNA-Met, at 3,702,509 to 3,702,585 _16390 AO356_16395: AO356_16395 - chemotaxis protein, at 3,702,689 to 3,704,746 _16395 Position (kb) 3702 3703Strain fitness (log2 ratio) -1 0 1at 3701.514 kb on - strandat 3701.531 kb on - strandat 3701.703 kb on + strand, within AO356_16385at 3701.703 kb on + strand, within AO356_16385at 3701.703 kb on + strand, within AO356_16385at 3701.703 kb on + strand, within AO356_16385at 3701.703 kb on + strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.704 kb on - strand, within AO356_16385at 3701.734 kb on + strand, within AO356_16385at 3701.734 kb on + strand, within AO356_16385at 3701.734 kb on + strand, within AO356_16385at 3701.735 kb on - strand, within AO356_16385at 3702.062 kb on + strand, within AO356_16385at 3702.062 kb on + strand, within AO356_16385at 3702.063 kb on - strand, within AO356_16385at 3702.069 kb on + strand, within AO356_16385at 3702.307 kb on + strand, within AO356_16385at 3702.307 kb on + strand, within AO356_16385at 3702.403 kb on + strandat 3702.404 kb on - strandat 3702.425 kb on + strandat 3702.425 kb on + strandat 3702.425 kb on + strandat 3702.426 kb on - strandat 3702.426 kb on - strandat 3702.426 kb on - strandat 3702.426 kb on - strandat 3702.426 kb on - strandat 3702.468 kb on + strandat 3702.482 kb on - strandat 3702.482 kb on - strandat 3702.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,701,514 - +0.4
3,701,531 - -0.9
3,701,703 + AO356_16385 0.19 -0.1
3,701,703 + AO356_16385 0.19 +0.1
3,701,703 + AO356_16385 0.19 +0.2
3,701,703 + AO356_16385 0.19 +0.8
3,701,703 + AO356_16385 0.19 +0.4
3,701,704 - AO356_16385 0.19 -0.1
3,701,704 - AO356_16385 0.19 -0.3
3,701,704 - AO356_16385 0.19 -1.0
3,701,704 - AO356_16385 0.19 -0.3
3,701,704 - AO356_16385 0.19 +0.5
3,701,734 + AO356_16385 0.22 +0.7
3,701,734 + AO356_16385 0.22 +0.1
3,701,734 + AO356_16385 0.22 +0.0
3,701,735 - AO356_16385 0.22 -0.6
3,702,062 + AO356_16385 0.58 -0.2
3,702,062 + AO356_16385 0.58 +0.4
3,702,063 - AO356_16385 0.58 -0.5
3,702,069 + AO356_16385 0.59 +0.2
3,702,307 + AO356_16385 0.85 +1.2
3,702,307 + AO356_16385 0.85 +0.5
3,702,403 + +0.3
3,702,404 - +0.6
3,702,425 + -0.6
3,702,425 + -0.5
3,702,425 + -0.7
3,702,426 - -0.4
3,702,426 - +0.0
3,702,426 - +0.2
3,702,426 - +0.4
3,702,426 - +0.4
3,702,468 + -0.1
3,702,482 - -0.7
3,702,482 - +1.2
3,702,641 - +0.0

Or see this region's nucleotide sequence