Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16375 and AO356_16380 overlap by 1 nucleotides AO356_16380 and AO356_16385 are separated by 112 nucleotides AO356_16385 and AO356_16390 are separated by 61 nucleotides AO356_16390 and AO356_16395 are separated by 103 nucleotides
AO356_16375: AO356_16375 - hypothetical protein, at 3,700,138 to 3,701,064
_16375
AO356_16380: AO356_16380 - hypothetical protein, at 3,701,064 to 3,701,420
_16380
AO356_16385: AO356_16385 - transcriptional regulator, at 3,701,533 to 3,702,447
_16385
AO356_16390: AO356_16390 - tRNA-Met, at 3,702,509 to 3,702,585
_16390
AO356_16395: AO356_16395 - chemotaxis protein, at 3,702,689 to 3,704,746
_16395
Position (kb)
3701
3702
3703 Strain fitness (log2 ratio)
-1
0
1
2 at 3700.620 kb on + strand, within AO356_16375 at 3700.620 kb on + strand, within AO356_16375 at 3700.621 kb on - strand, within AO356_16375 at 3700.621 kb on - strand, within AO356_16375 at 3700.870 kb on + strand, within AO356_16375 at 3700.870 kb on + strand, within AO356_16375 at 3700.870 kb on + strand, within AO356_16375 at 3700.870 kb on + strand, within AO356_16375 at 3700.871 kb on - strand, within AO356_16375 at 3700.951 kb on + strand, within AO356_16375 at 3700.951 kb on + strand, within AO356_16375 at 3700.951 kb on + strand, within AO356_16375 at 3700.952 kb on - strand, within AO356_16375 at 3701.244 kb on + strand, within AO356_16380 at 3701.244 kb on + strand, within AO356_16380 at 3701.244 kb on + strand, within AO356_16380 at 3701.244 kb on + strand, within AO356_16380 at 3701.244 kb on + strand, within AO356_16380 at 3701.245 kb on - strand, within AO356_16380 at 3701.245 kb on - strand, within AO356_16380 at 3701.245 kb on - strand, within AO356_16380 at 3701.290 kb on + strand, within AO356_16380 at 3701.291 kb on - strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.344 kb on + strand, within AO356_16380 at 3701.345 kb on - strand, within AO356_16380 at 3701.345 kb on - strand, within AO356_16380 at 3701.345 kb on - strand, within AO356_16380 at 3701.345 kb on - strand, within AO356_16380 at 3701.345 kb on - strand, within AO356_16380 at 3701.345 kb on - strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.350 kb on + strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.351 kb on - strand, within AO356_16380 at 3701.414 kb on + strand at 3701.414 kb on + strand at 3701.415 kb on - strand at 3701.415 kb on - strand at 3701.415 kb on - strand at 3701.415 kb on - strand at 3701.415 kb on - strand at 3701.415 kb on - strand at 3701.415 kb on - strand at 3701.415 kb on - strand at 3701.472 kb on - strand at 3701.514 kb on - strand at 3701.531 kb on - strand at 3701.703 kb on + strand, within AO356_16385 at 3701.703 kb on + strand, within AO356_16385 at 3701.703 kb on + strand, within AO356_16385 at 3701.703 kb on + strand, within AO356_16385 at 3701.703 kb on + strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.704 kb on - strand, within AO356_16385 at 3701.734 kb on + strand, within AO356_16385 at 3701.734 kb on + strand, within AO356_16385 at 3701.734 kb on + strand, within AO356_16385 at 3701.735 kb on - strand, within AO356_16385 at 3702.062 kb on + strand, within AO356_16385 at 3702.062 kb on + strand, within AO356_16385 at 3702.063 kb on - strand, within AO356_16385 at 3702.069 kb on + strand, within AO356_16385 at 3702.307 kb on + strand, within AO356_16385 at 3702.307 kb on + strand, within AO356_16385 at 3702.403 kb on + strand at 3702.404 kb on - strand at 3702.425 kb on + strand at 3702.425 kb on + strand at 3702.425 kb on + strand at 3702.426 kb on - strand at 3702.426 kb on - strand at 3702.426 kb on - strand at 3702.426 kb on - strand at 3702.426 kb on - strand at 3702.468 kb on + strand at 3702.482 kb on - strand at 3702.482 kb on - strand at 3702.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,700,620 + AO356_16375 0.52 +0.6 3,700,620 + AO356_16375 0.52 -0.1 3,700,621 - AO356_16375 0.52 +0.0 3,700,621 - AO356_16375 0.52 +0.2 3,700,870 + AO356_16375 0.79 +0.0 3,700,870 + AO356_16375 0.79 +0.6 3,700,870 + AO356_16375 0.79 -0.1 3,700,870 + AO356_16375 0.79 +0.7 3,700,871 - AO356_16375 0.79 +2.0 3,700,951 + AO356_16375 0.88 -0.6 3,700,951 + AO356_16375 0.88 -0.9 3,700,951 + AO356_16375 0.88 -0.0 3,700,952 - AO356_16375 0.88 +0.2 3,701,244 + AO356_16380 0.50 -0.2 3,701,244 + AO356_16380 0.50 +0.5 3,701,244 + AO356_16380 0.50 -0.2 3,701,244 + AO356_16380 0.50 -0.2 3,701,244 + AO356_16380 0.50 +0.2 3,701,245 - AO356_16380 0.51 -0.0 3,701,245 - AO356_16380 0.51 -0.1 3,701,245 - AO356_16380 0.51 -0.7 3,701,290 + AO356_16380 0.63 -0.4 3,701,291 - AO356_16380 0.64 +0.4 3,701,344 + AO356_16380 0.78 -0.4 3,701,344 + AO356_16380 0.78 -1.6 3,701,344 + AO356_16380 0.78 -0.1 3,701,344 + AO356_16380 0.78 +0.3 3,701,344 + AO356_16380 0.78 +0.6 3,701,344 + AO356_16380 0.78 +0.1 3,701,344 + AO356_16380 0.78 +0.1 3,701,344 + AO356_16380 0.78 -0.2 3,701,344 + AO356_16380 0.78 +0.1 3,701,345 - AO356_16380 0.79 +0.6 3,701,345 - AO356_16380 0.79 +0.5 3,701,345 - AO356_16380 0.79 -0.2 3,701,345 - AO356_16380 0.79 +0.4 3,701,345 - AO356_16380 0.79 -0.7 3,701,345 - AO356_16380 0.79 +0.6 3,701,350 + AO356_16380 0.80 +0.4 3,701,350 + AO356_16380 0.80 -0.6 3,701,350 + AO356_16380 0.80 -0.2 3,701,350 + AO356_16380 0.80 +0.2 3,701,350 + AO356_16380 0.80 +1.2 3,701,350 + AO356_16380 0.80 +0.3 3,701,350 + AO356_16380 0.80 -1.2 3,701,350 + AO356_16380 0.80 +0.7 3,701,350 + AO356_16380 0.80 -0.6 3,701,350 + AO356_16380 0.80 +0.3 3,701,351 - AO356_16380 0.80 -0.0 3,701,351 - AO356_16380 0.80 -0.4 3,701,351 - AO356_16380 0.80 -0.1 3,701,351 - AO356_16380 0.80 +0.6 3,701,351 - AO356_16380 0.80 +0.0 3,701,351 - AO356_16380 0.80 +0.9 3,701,351 - AO356_16380 0.80 -0.1 3,701,351 - AO356_16380 0.80 -0.1 3,701,351 - AO356_16380 0.80 +1.0 3,701,351 - AO356_16380 0.80 +0.1 3,701,414 + -0.1 3,701,414 + +0.2 3,701,415 - -0.9 3,701,415 - -0.6 3,701,415 - -0.0 3,701,415 - +0.7 3,701,415 - +0.1 3,701,415 - +0.6 3,701,415 - -0.0 3,701,415 - +0.2 3,701,472 - +0.2 3,701,514 - +0.4 3,701,531 - -0.9 3,701,703 + AO356_16385 0.19 -0.1 3,701,703 + AO356_16385 0.19 +0.1 3,701,703 + AO356_16385 0.19 +0.2 3,701,703 + AO356_16385 0.19 +0.8 3,701,703 + AO356_16385 0.19 +0.4 3,701,704 - AO356_16385 0.19 -0.1 3,701,704 - AO356_16385 0.19 -0.3 3,701,704 - AO356_16385 0.19 -1.0 3,701,704 - AO356_16385 0.19 -0.3 3,701,704 - AO356_16385 0.19 +0.5 3,701,734 + AO356_16385 0.22 +0.7 3,701,734 + AO356_16385 0.22 +0.1 3,701,734 + AO356_16385 0.22 +0.0 3,701,735 - AO356_16385 0.22 -0.6 3,702,062 + AO356_16385 0.58 -0.2 3,702,062 + AO356_16385 0.58 +0.4 3,702,063 - AO356_16385 0.58 -0.5 3,702,069 + AO356_16385 0.59 +0.2 3,702,307 + AO356_16385 0.85 +1.2 3,702,307 + AO356_16385 0.85 +0.5 3,702,403 + +0.3 3,702,404 - +0.6 3,702,425 + -0.6 3,702,425 + -0.5 3,702,425 + -0.7 3,702,426 - -0.4 3,702,426 - +0.0 3,702,426 - +0.2 3,702,426 - +0.4 3,702,426 - +0.4 3,702,468 + -0.1 3,702,482 - -0.7 3,702,482 - +1.2 3,702,641 - +0.0
Or see this region's nucleotide sequence