Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_13420 and AO356_13425 are separated by 35 nucleotides AO356_13425 and AO356_13430 are separated by 54 nucleotides AO356_13430 and AO356_13435 are separated by 162 nucleotides
AO356_13420: AO356_13420 - pyrroline-5-carboxylate reductase, at 3,044,133 to 3,044,951
_13420
AO356_13425: AO356_13425 - hypothetical protein, at 3,044,987 to 3,045,673
_13425
AO356_13430: AO356_13430 - twitching motility protein PilT, at 3,045,728 to 3,046,762
_13430
AO356_13435: AO356_13435 - peptidase P60, at 3,046,925 to 3,047,536
_13435
Position (kb)
3045
3046
3047 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3044.963 kb on - strand at 3044.963 kb on - strand at 3044.963 kb on - strand at 3044.965 kb on - strand at 3044.965 kb on - strand at 3044.965 kb on - strand at 3044.965 kb on - strand at 3045.001 kb on - strand at 3045.001 kb on - strand at 3045.026 kb on - strand at 3045.026 kb on - strand at 3045.501 kb on + strand, within AO356_13425 at 3045.502 kb on - strand, within AO356_13425 at 3045.534 kb on + strand, within AO356_13425 at 3045.535 kb on - strand, within AO356_13425 at 3045.641 kb on - strand at 3045.641 kb on - strand at 3045.673 kb on + strand at 3045.673 kb on + strand at 3045.673 kb on + strand at 3045.673 kb on + strand at 3045.673 kb on + strand at 3045.673 kb on + strand at 3045.674 kb on - strand at 3045.674 kb on - strand at 3045.674 kb on - strand at 3045.674 kb on - strand at 3045.674 kb on - strand at 3045.674 kb on - strand at 3045.674 kb on - strand at 3045.674 kb on - strand at 3045.709 kb on - strand at 3045.709 kb on - strand at 3045.709 kb on - strand at 3045.709 kb on - strand at 3045.709 kb on - strand at 3045.709 kb on - strand at 3045.733 kb on + strand at 3045.816 kb on + strand at 3045.816 kb on + strand at 3045.816 kb on + strand at 3045.816 kb on + strand at 3045.816 kb on + strand at 3045.816 kb on + strand at 3045.817 kb on - strand at 3045.817 kb on - strand at 3045.817 kb on - strand at 3045.817 kb on - strand at 3045.828 kb on + strand at 3045.829 kb on - strand at 3045.829 kb on - strand at 3045.829 kb on - strand at 3045.829 kb on - strand at 3045.881 kb on + strand, within AO356_13430 at 3045.881 kb on + strand, within AO356_13430 at 3045.881 kb on + strand, within AO356_13430 at 3045.881 kb on + strand, within AO356_13430 at 3045.882 kb on - strand, within AO356_13430 at 3045.882 kb on - strand, within AO356_13430 at 3045.882 kb on - strand, within AO356_13430 at 3045.882 kb on - strand, within AO356_13430 at 3045.914 kb on + strand, within AO356_13430 at 3045.915 kb on - strand, within AO356_13430 at 3046.163 kb on + strand, within AO356_13430 at 3046.163 kb on + strand, within AO356_13430 at 3046.164 kb on - strand, within AO356_13430 at 3046.164 kb on - strand, within AO356_13430 at 3046.164 kb on - strand, within AO356_13430 at 3046.177 kb on + strand, within AO356_13430 at 3046.178 kb on - strand, within AO356_13430 at 3046.178 kb on - strand, within AO356_13430 at 3046.178 kb on - strand, within AO356_13430 at 3046.178 kb on - strand, within AO356_13430 at 3046.178 kb on - strand, within AO356_13430 at 3046.214 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.631 kb on + strand, within AO356_13430 at 3046.632 kb on - strand, within AO356_13430 at 3046.632 kb on - strand, within AO356_13430 at 3046.632 kb on - strand, within AO356_13430 at 3046.632 kb on - strand, within AO356_13430 at 3046.632 kb on - strand, within AO356_13430 at 3046.744 kb on + strand at 3046.745 kb on - strand at 3046.745 kb on - strand at 3046.745 kb on - strand at 3046.754 kb on - strand at 3046.982 kb on + strand at 3046.982 kb on + strand at 3046.982 kb on + strand at 3046.982 kb on + strand at 3046.982 kb on + strand at 3046.982 kb on + strand at 3046.983 kb on - strand at 3046.983 kb on - strand at 3046.983 kb on - strand at 3046.983 kb on - strand at 3046.983 kb on - strand at 3046.983 kb on - strand at 3046.983 kb on - strand at 3046.983 kb on - strand at 3046.986 kb on + strand at 3046.986 kb on + strand at 3046.986 kb on + strand at 3046.986 kb on + strand at 3046.987 kb on - strand, within AO356_13435 at 3046.987 kb on - strand, within AO356_13435 at 3047.002 kb on - strand, within AO356_13435 at 3047.002 kb on - strand, within AO356_13435 at 3047.002 kb on - strand, within AO356_13435 at 3047.076 kb on + strand, within AO356_13435 at 3047.076 kb on + strand, within AO356_13435 at 3047.076 kb on + strand, within AO356_13435 at 3047.076 kb on + strand, within AO356_13435 at 3047.076 kb on + strand, within AO356_13435 at 3047.076 kb on + strand, within AO356_13435 at 3047.076 kb on + strand, within AO356_13435 at 3047.077 kb on - strand, within AO356_13435 at 3047.077 kb on - strand, within AO356_13435 at 3047.077 kb on - strand, within AO356_13435 at 3047.077 kb on - strand, within AO356_13435 at 3047.153 kb on + strand, within AO356_13435 at 3047.153 kb on + strand, within AO356_13435 at 3047.154 kb on - strand, within AO356_13435 at 3047.226 kb on + strand, within AO356_13435 at 3047.227 kb on - strand, within AO356_13435 at 3047.257 kb on + strand, within AO356_13435 at 3047.257 kb on + strand, within AO356_13435 at 3047.257 kb on + strand, within AO356_13435 at 3047.258 kb on - strand, within AO356_13435 at 3047.258 kb on - strand, within AO356_13435 at 3047.258 kb on - strand, within AO356_13435 at 3047.258 kb on - strand, within AO356_13435 at 3047.283 kb on + strand, within AO356_13435 at 3047.283 kb on + strand, within AO356_13435 at 3047.284 kb on - strand, within AO356_13435 at 3047.298 kb on - strand, within AO356_13435 at 3047.436 kb on + strand, within AO356_13435 at 3047.436 kb on + strand, within AO356_13435 at 3047.436 kb on + strand, within AO356_13435 at 3047.495 kb on + strand at 3047.495 kb on + strand at 3047.495 kb on + strand at 3047.495 kb on + strand at 3047.495 kb on + strand at 3047.496 kb on - strand at 3047.496 kb on - strand at 3047.496 kb on - strand at 3047.496 kb on - strand at 3047.496 kb on - strand at 3047.496 kb on - strand at 3047.496 kb on - strand at 3047.496 kb on - strand at 3047.498 kb on + strand at 3047.499 kb on - strand at 3047.538 kb on - strand at 3047.550 kb on + strand at 3047.550 kb on + strand at 3047.550 kb on + strand at 3047.551 kb on - strand at 3047.570 kb on + strand at 3047.570 kb on + strand at 3047.572 kb on + strand at 3047.572 kb on + strand at 3047.623 kb on + strand at 3047.623 kb on + strand at 3047.623 kb on + strand at 3047.623 kb on + strand at 3047.623 kb on + strand at 3047.623 kb on + strand at 3047.623 kb on + strand at 3047.624 kb on - strand at 3047.624 kb on - strand at 3047.624 kb on - strand at 3047.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,044,963 - -0.4 3,044,963 - +0.5 3,044,963 - +0.3 3,044,965 - +0.5 3,044,965 - -0.7 3,044,965 - +0.3 3,044,965 - -0.1 3,045,001 - -0.1 3,045,001 - +0.1 3,045,026 - -0.7 3,045,026 - +0.8 3,045,501 + AO356_13425 0.75 -0.2 3,045,502 - AO356_13425 0.75 -2.1 3,045,534 + AO356_13425 0.80 -1.9 3,045,535 - AO356_13425 0.80 -0.1 3,045,641 - +0.2 3,045,641 - +0.2 3,045,673 + -0.7 3,045,673 + +0.9 3,045,673 + -0.9 3,045,673 + +2.4 3,045,673 + -0.9 3,045,673 + -0.1 3,045,674 - -0.5 3,045,674 - +0.4 3,045,674 - -0.5 3,045,674 - +0.4 3,045,674 - -0.2 3,045,674 - +0.2 3,045,674 - +1.1 3,045,674 - -1.0 3,045,709 - +0.6 3,045,709 - +0.0 3,045,709 - +0.5 3,045,709 - +1.1 3,045,709 - +0.1 3,045,709 - +0.7 3,045,733 + -1.1 3,045,816 + +0.7 3,045,816 + -2.7 3,045,816 + +0.4 3,045,816 + +0.1 3,045,816 + +0.1 3,045,816 + -1.1 3,045,817 - -0.8 3,045,817 - +1.0 3,045,817 - -0.1 3,045,817 - -0.7 3,045,828 + +0.1 3,045,829 - +1.1 3,045,829 - +0.2 3,045,829 - +0.5 3,045,829 - +0.7 3,045,881 + AO356_13430 0.15 +0.4 3,045,881 + AO356_13430 0.15 -0.3 3,045,881 + AO356_13430 0.15 +0.2 3,045,881 + AO356_13430 0.15 -0.1 3,045,882 - AO356_13430 0.15 +0.7 3,045,882 - AO356_13430 0.15 +0.5 3,045,882 - AO356_13430 0.15 +0.4 3,045,882 - AO356_13430 0.15 -0.9 3,045,914 + AO356_13430 0.18 +0.2 3,045,915 - AO356_13430 0.18 +0.1 3,046,163 + AO356_13430 0.42 +0.4 3,046,163 + AO356_13430 0.42 -0.2 3,046,164 - AO356_13430 0.42 +0.9 3,046,164 - AO356_13430 0.42 +0.1 3,046,164 - AO356_13430 0.42 -1.1 3,046,177 + AO356_13430 0.43 +0.3 3,046,178 - AO356_13430 0.43 +0.5 3,046,178 - AO356_13430 0.43 -0.6 3,046,178 - AO356_13430 0.43 +0.3 3,046,178 - AO356_13430 0.43 +1.0 3,046,178 - AO356_13430 0.43 -0.0 3,046,214 + AO356_13430 0.47 +0.4 3,046,631 + AO356_13430 0.87 +0.3 3,046,631 + AO356_13430 0.87 +1.0 3,046,631 + AO356_13430 0.87 +1.0 3,046,631 + AO356_13430 0.87 +0.2 3,046,631 + AO356_13430 0.87 +0.8 3,046,631 + AO356_13430 0.87 +0.7 3,046,631 + AO356_13430 0.87 -0.0 3,046,631 + AO356_13430 0.87 +1.0 3,046,631 + AO356_13430 0.87 -0.3 3,046,631 + AO356_13430 0.87 -1.0 3,046,632 - AO356_13430 0.87 -1.3 3,046,632 - AO356_13430 0.87 +0.3 3,046,632 - AO356_13430 0.87 +0.1 3,046,632 - AO356_13430 0.87 -1.7 3,046,632 - AO356_13430 0.87 +0.3 3,046,744 + +0.7 3,046,745 - -0.5 3,046,745 - +0.1 3,046,745 - +0.2 3,046,754 - -1.1 3,046,982 + -0.4 3,046,982 + +0.3 3,046,982 + +0.1 3,046,982 + +0.1 3,046,982 + +0.1 3,046,982 + +0.1 3,046,983 - -2.9 3,046,983 - -0.1 3,046,983 - +0.2 3,046,983 - +0.9 3,046,983 - -0.4 3,046,983 - +0.4 3,046,983 - -0.6 3,046,983 - -0.3 3,046,986 + -0.5 3,046,986 + +0.6 3,046,986 + +0.3 3,046,986 + -0.2 3,046,987 - AO356_13435 0.10 -0.1 3,046,987 - AO356_13435 0.10 +0.5 3,047,002 - AO356_13435 0.13 +0.1 3,047,002 - AO356_13435 0.13 +0.7 3,047,002 - AO356_13435 0.13 -0.3 3,047,076 + AO356_13435 0.25 -0.2 3,047,076 + AO356_13435 0.25 +0.4 3,047,076 + AO356_13435 0.25 +0.3 3,047,076 + AO356_13435 0.25 +0.4 3,047,076 + AO356_13435 0.25 -0.1 3,047,076 + AO356_13435 0.25 -0.2 3,047,076 + AO356_13435 0.25 +0.8 3,047,077 - AO356_13435 0.25 -1.1 3,047,077 - AO356_13435 0.25 -0.7 3,047,077 - AO356_13435 0.25 +0.4 3,047,077 - AO356_13435 0.25 -1.2 3,047,153 + AO356_13435 0.37 +0.1 3,047,153 + AO356_13435 0.37 -0.4 3,047,154 - AO356_13435 0.37 -0.2 3,047,226 + AO356_13435 0.49 +1.3 3,047,227 - AO356_13435 0.49 +0.3 3,047,257 + AO356_13435 0.54 +0.1 3,047,257 + AO356_13435 0.54 -0.6 3,047,257 + AO356_13435 0.54 -0.3 3,047,258 - AO356_13435 0.54 -0.9 3,047,258 - AO356_13435 0.54 -0.2 3,047,258 - AO356_13435 0.54 -0.6 3,047,258 - AO356_13435 0.54 +0.3 3,047,283 + AO356_13435 0.58 -1.6 3,047,283 + AO356_13435 0.58 +0.3 3,047,284 - AO356_13435 0.59 +0.0 3,047,298 - AO356_13435 0.61 +0.1 3,047,436 + AO356_13435 0.83 +1.4 3,047,436 + AO356_13435 0.83 +0.2 3,047,436 + AO356_13435 0.83 +0.4 3,047,495 + +0.9 3,047,495 + -0.4 3,047,495 + +0.1 3,047,495 + +0.6 3,047,495 + -0.9 3,047,496 - +0.9 3,047,496 - +0.1 3,047,496 - +0.4 3,047,496 - +0.5 3,047,496 - +0.3 3,047,496 - +0.4 3,047,496 - -0.4 3,047,496 - +0.8 3,047,498 + +0.6 3,047,499 - -0.4 3,047,538 - +0.9 3,047,550 + -0.3 3,047,550 + +0.4 3,047,550 + +0.2 3,047,551 - +0.5 3,047,570 + -0.2 3,047,570 + -0.2 3,047,572 + -1.2 3,047,572 + -2.0 3,047,623 + +0.8 3,047,623 + +0.6 3,047,623 + -0.6 3,047,623 + -0.7 3,047,623 + +0.7 3,047,623 + -0.7 3,047,623 + +0.8 3,047,624 - +0.5 3,047,624 - -0.1 3,047,624 - +0.6 3,047,624 - -0.2
Or see this region's nucleotide sequence