Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08110

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08105 and AO356_08110 are separated by 2 nucleotidesAO356_08110 and AO356_08115 are separated by 228 nucleotidesAO356_08115 and AO356_08120 are separated by 20 nucleotides AO356_08105: AO356_08105 - 3-ketoacyl-ACP reductase, at 1,814,815 to 1,816,167 _08105 AO356_08110: AO356_08110 - acyl dehydratase, at 1,816,170 to 1,817,024 _08110 AO356_08115: AO356_08115 - hypothetical protein, at 1,817,253 to 1,817,810 _08115 AO356_08120: AO356_08120 - hypothetical protein, at 1,817,831 to 1,818,448 _08120 Position (kb) 1816 1817 1818Strain fitness (log2 ratio) -2 -1 0 1 2at 1815.310 kb on + strand, within AO356_08105at 1815.310 kb on + strand, within AO356_08105at 1815.310 kb on + strand, within AO356_08105at 1815.310 kb on + strand, within AO356_08105at 1815.311 kb on - strand, within AO356_08105at 1815.311 kb on - strand, within AO356_08105at 1815.311 kb on - strand, within AO356_08105at 1815.311 kb on - strand, within AO356_08105at 1815.311 kb on - strand, within AO356_08105at 1815.311 kb on - strand, within AO356_08105at 1815.615 kb on + strand, within AO356_08105at 1815.615 kb on + strand, within AO356_08105at 1815.880 kb on + strand, within AO356_08105at 1815.880 kb on + strand, within AO356_08105at 1815.880 kb on + strand, within AO356_08105at 1815.881 kb on - strand, within AO356_08105at 1815.881 kb on - strand, within AO356_08105at 1815.881 kb on - strand, within AO356_08105at 1815.881 kb on - strand, within AO356_08105at 1815.881 kb on - strand, within AO356_08105at 1815.881 kb on - strand, within AO356_08105at 1816.140 kb on - strandat 1816.221 kb on + strandat 1816.221 kb on + strandat 1816.368 kb on + strand, within AO356_08110at 1816.728 kb on + strand, within AO356_08110at 1816.728 kb on + strand, within AO356_08110at 1816.728 kb on + strand, within AO356_08110at 1816.749 kb on + strand, within AO356_08110at 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.266 kb on + strandat 1817.266 kb on + strandat 1817.266 kb on + strandat 1817.419 kb on + strand, within AO356_08115at 1817.419 kb on + strand, within AO356_08115at 1817.420 kb on - strand, within AO356_08115at 1817.420 kb on - strand, within AO356_08115at 1817.443 kb on + strand, within AO356_08115at 1817.443 kb on + strand, within AO356_08115at 1817.443 kb on + strand, within AO356_08115at 1817.536 kb on + strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.753 kb on + strand, within AO356_08115at 1817.753 kb on + strand, within AO356_08115at 1817.754 kb on - strand, within AO356_08115at 1817.791 kb on - strandat 1817.828 kb on + strandat 1817.829 kb on - strandat 1817.829 kb on - strandat 1817.997 kb on + strand, within AO356_08120at 1817.997 kb on + strand, within AO356_08120at 1817.997 kb on + strand, within AO356_08120at 1817.997 kb on + strand, within AO356_08120at 1817.998 kb on - strand, within AO356_08120at 1817.998 kb on - strand, within AO356_08120at 1817.998 kb on - strand, within AO356_08120

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,815,310 + AO356_08105 0.37 +0.0
1,815,310 + AO356_08105 0.37 +0.1
1,815,310 + AO356_08105 0.37 +0.4
1,815,310 + AO356_08105 0.37 +0.4
1,815,311 - AO356_08105 0.37 -0.1
1,815,311 - AO356_08105 0.37 +0.6
1,815,311 - AO356_08105 0.37 -0.1
1,815,311 - AO356_08105 0.37 +0.1
1,815,311 - AO356_08105 0.37 +0.5
1,815,311 - AO356_08105 0.37 -1.5
1,815,615 + AO356_08105 0.59 -0.3
1,815,615 + AO356_08105 0.59 +2.0
1,815,880 + AO356_08105 0.79 -0.0
1,815,880 + AO356_08105 0.79 -0.6
1,815,880 + AO356_08105 0.79 +0.2
1,815,881 - AO356_08105 0.79 +0.2
1,815,881 - AO356_08105 0.79 +1.1
1,815,881 - AO356_08105 0.79 +0.5
1,815,881 - AO356_08105 0.79 +0.3
1,815,881 - AO356_08105 0.79 -1.7
1,815,881 - AO356_08105 0.79 +0.2
1,816,140 - -0.1
1,816,221 + +1.2
1,816,221 + +0.9
1,816,368 + AO356_08110 0.23 +0.3
1,816,728 + AO356_08110 0.65 +0.4
1,816,728 + AO356_08110 0.65 +1.7
1,816,728 + AO356_08110 0.65 +0.4
1,816,749 + AO356_08110 0.68 -0.4
1,816,994 + +0.1
1,816,994 + +0.7
1,816,994 + +0.8
1,816,994 + -0.2
1,816,994 + +0.6
1,816,994 + +0.9
1,816,994 + -0.0
1,816,995 - -1.8
1,816,995 - +0.7
1,816,995 - -0.4
1,816,995 - +0.2
1,816,995 - -0.7
1,816,995 - +1.2
1,816,995 - +0.6
1,816,995 - +0.0
1,817,163 + +1.0
1,817,163 + +0.4
1,817,163 + -0.2
1,817,163 + +0.8
1,817,163 + +0.1
1,817,163 + +0.4
1,817,164 - +0.2
1,817,164 - -0.3
1,817,164 - +0.0
1,817,164 - +0.7
1,817,164 - +0.7
1,817,164 - +0.1
1,817,164 - +0.4
1,817,164 - -0.3
1,817,167 + -0.7
1,817,167 + +0.3
1,817,167 + +0.2
1,817,167 + +0.2
1,817,167 + +0.8
1,817,167 + +1.0
1,817,167 + +0.9
1,817,167 + +0.8
1,817,168 - +0.8
1,817,168 - -0.9
1,817,168 - +0.2
1,817,168 - +1.4
1,817,168 - -0.4
1,817,168 - +0.1
1,817,168 - +2.0
1,817,168 - +0.8
1,817,168 - -0.8
1,817,168 - -0.4
1,817,266 + -0.5
1,817,266 + -0.1
1,817,266 + +0.1
1,817,419 + AO356_08115 0.30 +0.1
1,817,419 + AO356_08115 0.30 -0.2
1,817,420 - AO356_08115 0.30 +0.6
1,817,420 - AO356_08115 0.30 -0.2
1,817,443 + AO356_08115 0.34 +0.2
1,817,443 + AO356_08115 0.34 +0.7
1,817,443 + AO356_08115 0.34 +0.2
1,817,536 + AO356_08115 0.51 -1.0
1,817,537 - AO356_08115 0.51 +0.4
1,817,537 - AO356_08115 0.51 -0.5
1,817,537 - AO356_08115 0.51 -1.9
1,817,537 - AO356_08115 0.51 +0.1
1,817,537 - AO356_08115 0.51 -0.0
1,817,753 + AO356_08115 0.90 +0.1
1,817,753 + AO356_08115 0.90 +0.6
1,817,754 - AO356_08115 0.90 +0.8
1,817,791 - -0.1
1,817,828 + +0.4
1,817,829 - +0.1
1,817,829 - +0.9
1,817,997 + AO356_08120 0.27 -1.2
1,817,997 + AO356_08120 0.27 +0.6
1,817,997 + AO356_08120 0.27 +0.9
1,817,997 + AO356_08120 0.27 -0.5
1,817,998 - AO356_08120 0.27 +0.1
1,817,998 - AO356_08120 0.27 -0.1
1,817,998 - AO356_08120 0.27 +0.5

Or see this region's nucleotide sequence