Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01665 and AO356_01670 are separated by 18 nucleotides AO356_01670 and AO356_01675 are separated by 233 nucleotides
AO356_01665: AO356_01665 - FAD-binding oxidoreductase, at 373,894 to 375,009
_01665
AO356_01670: AO356_01670 - spermidine/putrescine ABC transporter substrate-binding protein, at 375,028 to 376,089
_01670
AO356_01675: AO356_01675 - protein kinase, at 376,323 to 377,648
_01675
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1 at 374.200 kb on + strand, within AO356_01665 at 374.200 kb on + strand, within AO356_01665 at 374.200 kb on + strand, within AO356_01665 at 374.201 kb on - strand, within AO356_01665 at 374.442 kb on - strand, within AO356_01665 at 374.442 kb on - strand, within AO356_01665 at 374.626 kb on - strand, within AO356_01665 at 374.629 kb on + strand, within AO356_01665 at 374.630 kb on - strand, within AO356_01665 at 374.630 kb on - strand, within AO356_01665 at 374.630 kb on - strand, within AO356_01665 at 374.630 kb on - strand, within AO356_01665 at 374.660 kb on + strand, within AO356_01665 at 374.661 kb on - strand, within AO356_01665 at 374.661 kb on - strand, within AO356_01665 at 374.810 kb on - strand, within AO356_01665 at 374.861 kb on + strand, within AO356_01665 at 375.010 kb on + strand at 375.011 kb on - strand at 375.011 kb on - strand at 375.034 kb on - strand at 375.133 kb on + strand at 375.169 kb on + strand, within AO356_01670 at 375.210 kb on + strand, within AO356_01670 at 375.210 kb on + strand, within AO356_01670 at 375.211 kb on - strand, within AO356_01670 at 375.211 kb on - strand, within AO356_01670 at 375.319 kb on + strand, within AO356_01670 at 375.320 kb on - strand, within AO356_01670 at 375.396 kb on + strand, within AO356_01670 at 375.445 kb on + strand, within AO356_01670 at 375.445 kb on + strand, within AO356_01670 at 375.446 kb on - strand, within AO356_01670 at 375.480 kb on + strand, within AO356_01670 at 375.481 kb on - strand, within AO356_01670 at 375.670 kb on + strand, within AO356_01670 at 375.671 kb on - strand, within AO356_01670 at 375.693 kb on - strand, within AO356_01670 at 375.704 kb on + strand, within AO356_01670 at 375.705 kb on - strand, within AO356_01670 at 375.705 kb on - strand, within AO356_01670 at 375.705 kb on - strand, within AO356_01670 at 375.784 kb on + strand, within AO356_01670 at 375.785 kb on - strand, within AO356_01670 at 376.227 kb on - strand at 376.252 kb on - strand at 376.252 kb on - strand at 376.343 kb on - strand at 376.343 kb on - strand at 376.861 kb on - strand, within AO356_01675 at 377.037 kb on + strand, within AO356_01675 at 377.037 kb on + strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 374,200 + AO356_01665 0.27 -0.2 374,200 + AO356_01665 0.27 -1.6 374,200 + AO356_01665 0.27 +0.4 374,201 - AO356_01665 0.28 +0.4 374,442 - AO356_01665 0.49 -0.7 374,442 - AO356_01665 0.49 +0.7 374,626 - AO356_01665 0.66 -0.9 374,629 + AO356_01665 0.66 +1.1 374,630 - AO356_01665 0.66 -0.1 374,630 - AO356_01665 0.66 +0.5 374,630 - AO356_01665 0.66 +0.5 374,630 - AO356_01665 0.66 -0.1 374,660 + AO356_01665 0.69 +0.6 374,661 - AO356_01665 0.69 +0.5 374,661 - AO356_01665 0.69 +1.6 374,810 - AO356_01665 0.82 +0.5 374,861 + AO356_01665 0.87 +0.4 375,010 + +1.4 375,011 - +0.1 375,011 - +0.1 375,034 - -1.0 375,133 + +0.6 375,169 + AO356_01670 0.13 -0.4 375,210 + AO356_01670 0.17 +0.2 375,210 + AO356_01670 0.17 +0.2 375,211 - AO356_01670 0.17 -0.2 375,211 - AO356_01670 0.17 -1.2 375,319 + AO356_01670 0.27 -1.3 375,320 - AO356_01670 0.27 +0.1 375,396 + AO356_01670 0.35 +0.2 375,445 + AO356_01670 0.39 +0.9 375,445 + AO356_01670 0.39 -0.4 375,446 - AO356_01670 0.39 -0.1 375,480 + AO356_01670 0.43 -0.6 375,481 - AO356_01670 0.43 +0.1 375,670 + AO356_01670 0.60 -2.0 375,671 - AO356_01670 0.61 +0.7 375,693 - AO356_01670 0.63 -2.0 375,704 + AO356_01670 0.64 +1.1 375,705 - AO356_01670 0.64 +0.4 375,705 - AO356_01670 0.64 -0.6 375,705 - AO356_01670 0.64 +0.7 375,784 + AO356_01670 0.71 +0.5 375,785 - AO356_01670 0.71 +0.7 376,227 - +1.0 376,252 - -0.2 376,252 - -0.0 376,343 - +0.8 376,343 - -0.4 376,861 - AO356_01675 0.41 -0.2 377,037 + AO356_01675 0.54 +0.3 377,037 + AO356_01675 0.54 +0.8 377,038 - AO356_01675 0.54 +0.3 377,038 - AO356_01675 0.54 +0.1 377,038 - AO356_01675 0.54 -0.4 377,038 - AO356_01675 0.54 +0.3 377,038 - AO356_01675 0.54 +0.1 377,038 - AO356_01675 0.54 -0.6 377,038 - AO356_01675 0.54 -0.2
Or see this region's nucleotide sequence