Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01235 and AO356_01240 are separated by 27 nucleotides AO356_01240 and AO356_01245 are separated by 157 nucleotides
AO356_01235: AO356_01235 - MFS transporter, at 282,944 to 284,293
_01235
AO356_01240: AO356_01240 - glucarate dehydratase, at 284,321 to 285,664
_01240
AO356_01245: AO356_01245 - glycogen branching protein, at 285,822 to 288,056
_01245
Position (kb) 284
285
286 Strain fitness (log2 ratio) -1
0
1
2 at 283.352 kb on + strand, within AO356_01235 at 283.352 kb on + strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.505 kb on + strand, within AO356_01235 at 283.506 kb on - strand, within AO356_01235 at 283.724 kb on + strand, within AO356_01235 at 283.724 kb on + strand, within AO356_01235 at 283.725 kb on - strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.859 kb on + strand, within AO356_01235 at 283.859 kb on + strand, within AO356_01235 at 283.860 kb on - strand, within AO356_01235 at 283.860 kb on - strand, within AO356_01235 at 284.049 kb on - strand, within AO356_01235 at 284.049 kb on - strand, within AO356_01235 at 284.316 kb on + strand at 284.316 kb on + strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.694 kb on + strand, within AO356_01240 at 284.716 kb on - strand, within AO356_01240 at 284.716 kb on - strand, within AO356_01240 at 284.784 kb on - strand, within AO356_01240 at 284.816 kb on + strand, within AO356_01240 at 285.563 kb on + strand at 285.563 kb on + strand at 285.564 kb on - strand at 285.564 kb on - strand at 285.823 kb on + strand at 285.823 kb on + strand at 285.824 kb on - strand at 285.824 kb on - strand at 285.824 kb on - strand at 285.934 kb on + strand at 285.950 kb on - strand at 285.950 kb on - strand at 286.061 kb on + strand, within AO356_01245 at 286.091 kb on - strand, within AO356_01245 at 286.342 kb on + strand, within AO356_01245 at 286.462 kb on + strand, within AO356_01245 at 286.462 kb on + strand, within AO356_01245 at 286.463 kb on - strand, within AO356_01245 at 286.463 kb on - strand, within AO356_01245 at 286.463 kb on - strand, within AO356_01245 at 286.463 kb on - strand, within AO356_01245 at 286.525 kb on + strand, within AO356_01245 at 286.525 kb on + strand, within AO356_01245 at 286.564 kb on + strand, within AO356_01245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 283,352 + AO356_01235 0.30 -0.2 283,352 + AO356_01235 0.30 +0.3 283,353 - AO356_01235 0.30 -0.1 283,353 - AO356_01235 0.30 +0.3 283,355 + AO356_01235 0.30 +0.6 283,355 + AO356_01235 0.30 -1.4 283,505 + AO356_01235 0.42 -0.0 283,506 - AO356_01235 0.42 -0.1 283,724 + AO356_01235 0.58 -0.2 283,724 + AO356_01235 0.58 +0.5 283,725 - AO356_01235 0.58 -1.3 283,748 + AO356_01235 0.60 +0.3 283,748 + AO356_01235 0.60 +0.1 283,748 + AO356_01235 0.60 -0.6 283,749 - AO356_01235 0.60 +0.8 283,749 - AO356_01235 0.60 -0.1 283,749 - AO356_01235 0.60 -1.7 283,859 + AO356_01235 0.68 -0.7 283,859 + AO356_01235 0.68 -0.1 283,860 - AO356_01235 0.68 +0.8 283,860 - AO356_01235 0.68 -0.3 284,049 - AO356_01235 0.82 -0.2 284,049 - AO356_01235 0.82 +1.1 284,316 + +0.3 284,316 + -1.0 284,317 - -0.3 284,317 - +0.6 284,317 - -0.9 284,317 - +0.8 284,317 - -0.4 284,317 - -0.5 284,694 + AO356_01240 0.28 +1.2 284,716 - AO356_01240 0.29 +1.6 284,716 - AO356_01240 0.29 +0.0 284,784 - AO356_01240 0.34 -0.2 284,816 + AO356_01240 0.37 +0.0 285,563 + -0.5 285,563 + -1.1 285,564 - +0.5 285,564 - +0.3 285,823 + +2.1 285,823 + +0.6 285,824 - -0.9 285,824 - +0.7 285,824 - -0.2 285,934 + +1.2 285,950 - +1.0 285,950 - -0.7 286,061 + AO356_01245 0.11 +1.4 286,091 - AO356_01245 0.12 -0.1 286,342 + AO356_01245 0.23 -0.7 286,462 + AO356_01245 0.29 -0.3 286,462 + AO356_01245 0.29 -0.3 286,463 - AO356_01245 0.29 +0.8 286,463 - AO356_01245 0.29 +0.7 286,463 - AO356_01245 0.29 +0.8 286,463 - AO356_01245 0.29 -0.4 286,525 + AO356_01245 0.31 -0.1 286,525 + AO356_01245 0.31 -0.6 286,564 + AO356_01245 0.33 -0.6
Or see this region's nucleotide sequence