Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00815

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00805 and AO356_00810 are separated by 60 nucleotidesAO356_00810 and AO356_00815 are separated by 228 nucleotidesAO356_00815 and AO356_00820 overlap by 4 nucleotides AO356_00805: AO356_00805 - glycosyl transferase, at 182,114 to 183,220 _00805 AO356_00810: AO356_00810 - hypothetical protein, at 183,281 to 183,544 _00810 AO356_00815: AO356_00815 - hypothetical protein, at 183,773 to 185,794 _00815 AO356_00820: AO356_00820 - alcohol dehydrogenase, at 185,791 to 186,831 _00820 Position (kb) 183 184 185 186Strain fitness (log2 ratio) -1 0 1 2at 182.787 kb on + strand, within AO356_00805at 182.788 kb on - strand, within AO356_00805at 182.993 kb on + strand, within AO356_00805at 182.994 kb on - strand, within AO356_00805at 183.271 kb on + strandat 183.271 kb on + strandat 183.272 kb on - strandat 183.293 kb on + strandat 183.293 kb on + strandat 183.294 kb on - strandat 183.333 kb on - strand, within AO356_00810at 183.333 kb on - strand, within AO356_00810at 183.592 kb on + strandat 183.600 kb on + strandat 183.600 kb on + strandat 183.601 kb on - strandat 183.625 kb on + strandat 183.625 kb on + strandat 183.625 kb on + strandat 183.625 kb on + strandat 183.625 kb on + strandat 183.626 kb on - strandat 183.626 kb on - strandat 183.626 kb on - strandat 183.626 kb on - strandat 183.626 kb on - strandat 183.651 kb on + strandat 183.651 kb on + strandat 183.652 kb on - strandat 183.652 kb on - strandat 183.655 kb on + strandat 183.655 kb on + strandat 183.655 kb on + strandat 183.749 kb on + strandat 183.749 kb on + strandat 183.749 kb on + strandat 183.750 kb on - strandat 183.750 kb on - strandat 183.750 kb on - strandat 183.750 kb on - strandat 183.750 kb on - strandat 183.887 kb on + strandat 183.887 kb on + strandat 183.887 kb on + strandat 183.887 kb on + strandat 183.887 kb on + strandat 183.888 kb on - strandat 183.888 kb on - strandat 183.888 kb on - strandat 183.888 kb on - strandat 184.037 kb on + strand, within AO356_00815at 184.037 kb on + strand, within AO356_00815at 184.038 kb on - strand, within AO356_00815at 184.038 kb on - strand, within AO356_00815at 184.040 kb on + strand, within AO356_00815at 184.041 kb on - strand, within AO356_00815at 184.041 kb on - strand, within AO356_00815at 184.137 kb on - strand, within AO356_00815at 184.161 kb on - strand, within AO356_00815at 184.176 kb on - strand, within AO356_00815at 184.349 kb on + strand, within AO356_00815at 184.374 kb on - strand, within AO356_00815at 184.374 kb on - strand, within AO356_00815at 184.374 kb on - strand, within AO356_00815at 184.374 kb on - strand, within AO356_00815at 184.376 kb on - strand, within AO356_00815at 184.376 kb on - strand, within AO356_00815at 184.517 kb on + strand, within AO356_00815at 184.523 kb on + strand, within AO356_00815at 184.523 kb on + strand, within AO356_00815at 184.524 kb on - strand, within AO356_00815at 184.524 kb on - strand, within AO356_00815at 184.524 kb on - strand, within AO356_00815at 184.604 kb on + strand, within AO356_00815at 184.605 kb on - strand, within AO356_00815at 184.605 kb on - strand, within AO356_00815at 184.607 kb on + strand, within AO356_00815at 184.607 kb on + strand, within AO356_00815at 184.608 kb on - strand, within AO356_00815at 184.608 kb on - strand, within AO356_00815at 184.631 kb on + strand, within AO356_00815at 184.742 kb on + strand, within AO356_00815at 184.742 kb on + strand, within AO356_00815at 184.742 kb on + strand, within AO356_00815at 184.742 kb on + strand, within AO356_00815at 184.749 kb on - strand, within AO356_00815at 184.811 kb on + strand, within AO356_00815at 184.811 kb on + strand, within AO356_00815at 184.811 kb on + strand, within AO356_00815at 184.827 kb on + strand, within AO356_00815at 184.897 kb on + strand, within AO356_00815at 184.910 kb on + strand, within AO356_00815at 184.910 kb on + strand, within AO356_00815at 184.911 kb on - strand, within AO356_00815at 184.911 kb on - strand, within AO356_00815at 184.997 kb on + strand, within AO356_00815at 184.998 kb on - strand, within AO356_00815at 184.998 kb on - strand, within AO356_00815at 185.073 kb on - strand, within AO356_00815at 185.132 kb on + strand, within AO356_00815at 185.132 kb on + strand, within AO356_00815at 185.132 kb on + strand, within AO356_00815at 185.132 kb on + strand, within AO356_00815at 185.133 kb on - strand, within AO356_00815at 185.133 kb on - strand, within AO356_00815at 185.133 kb on - strand, within AO356_00815at 185.133 kb on - strand, within AO356_00815at 185.219 kb on + strand, within AO356_00815at 185.219 kb on + strand, within AO356_00815at 185.219 kb on + strand, within AO356_00815at 185.254 kb on - strand, within AO356_00815at 185.374 kb on + strand, within AO356_00815at 185.389 kb on + strand, within AO356_00815at 185.438 kb on + strand, within AO356_00815at 185.438 kb on + strand, within AO356_00815at 185.438 kb on + strand, within AO356_00815at 185.439 kb on - strand, within AO356_00815at 185.439 kb on - strand, within AO356_00815at 185.441 kb on + strand, within AO356_00815at 185.444 kb on + strand, within AO356_00815at 185.445 kb on - strand, within AO356_00815at 185.445 kb on - strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.498 kb on + strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.499 kb on - strand, within AO356_00815at 185.533 kb on + strand, within AO356_00815at 185.708 kb on + strandat 185.714 kb on + strandat 185.715 kb on - strandat 185.724 kb on - strandat 185.724 kb on - strandat 185.881 kb on - strandat 185.881 kb on - strandat 185.997 kb on + strand, within AO356_00820at 185.997 kb on + strand, within AO356_00820at 185.998 kb on - strand, within AO356_00820at 185.998 kb on - strand, within AO356_00820at 186.075 kb on + strand, within AO356_00820at 186.075 kb on + strand, within AO356_00820at 186.076 kb on - strand, within AO356_00820at 186.099 kb on + strand, within AO356_00820at 186.099 kb on + strand, within AO356_00820at 186.100 kb on - strand, within AO356_00820at 186.144 kb on + strand, within AO356_00820at 186.144 kb on + strand, within AO356_00820at 186.145 kb on - strand, within AO356_00820at 186.470 kb on + strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.471 kb on - strand, within AO356_00820at 186.721 kb on + strand, within AO356_00820at 186.721 kb on + strand, within AO356_00820

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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182,787 + AO356_00805 0.61 +0.8
182,788 - AO356_00805 0.61 +0.5
182,993 + AO356_00805 0.79 -0.6
182,994 - AO356_00805 0.79 +0.1
183,271 + +0.9
183,271 + -0.1
183,272 - -0.1
183,293 + -0.3
183,293 + -0.5
183,294 - -0.3
183,333 - AO356_00810 0.20 +0.8
183,333 - AO356_00810 0.20 +0.6
183,592 + +0.2
183,600 + +0.1
183,600 + +0.3
183,601 - +0.8
183,625 + -0.2
183,625 + -0.0
183,625 + -0.3
183,625 + +1.0
183,625 + -0.3
183,626 - +0.3
183,626 - +0.1
183,626 - -0.5
183,626 - -0.1
183,626 - +1.5
183,651 + +0.6
183,651 + +0.1
183,652 - -0.4
183,652 - +0.1
183,655 + -0.6
183,655 + +0.0
183,655 + +0.1
183,749 + -0.2
183,749 + +0.3
183,749 + -0.0
183,750 - -0.1
183,750 - -0.1
183,750 - +0.8
183,750 - +1.0
183,750 - +0.5
183,887 + +1.0
183,887 + -0.3
183,887 + +0.5
183,887 + -0.1
183,887 + +0.9
183,888 - -0.4
183,888 - +0.9
183,888 - +0.2
183,888 - -0.8
184,037 + AO356_00815 0.13 +0.2
184,037 + AO356_00815 0.13 -0.1
184,038 - AO356_00815 0.13 +0.3
184,038 - AO356_00815 0.13 +0.6
184,040 + AO356_00815 0.13 +0.2
184,041 - AO356_00815 0.13 +1.3
184,041 - AO356_00815 0.13 -0.5
184,137 - AO356_00815 0.18 +0.4
184,161 - AO356_00815 0.19 +0.8
184,176 - AO356_00815 0.20 +0.4
184,349 + AO356_00815 0.28 +1.1
184,374 - AO356_00815 0.30 +0.3
184,374 - AO356_00815 0.30 +0.2
184,374 - AO356_00815 0.30 -0.3
184,374 - AO356_00815 0.30 -0.0
184,376 - AO356_00815 0.30 +0.7
184,376 - AO356_00815 0.30 -0.1
184,517 + AO356_00815 0.37 +0.1
184,523 + AO356_00815 0.37 +0.1
184,523 + AO356_00815 0.37 +0.2
184,524 - AO356_00815 0.37 -0.5
184,524 - AO356_00815 0.37 +0.6
184,524 - AO356_00815 0.37 +0.2
184,604 + AO356_00815 0.41 +0.5
184,605 - AO356_00815 0.41 +1.1
184,605 - AO356_00815 0.41 +0.4
184,607 + AO356_00815 0.41 -0.5
184,607 + AO356_00815 0.41 +0.7
184,608 - AO356_00815 0.41 +0.0
184,608 - AO356_00815 0.41 +0.2
184,631 + AO356_00815 0.42 +0.8
184,742 + AO356_00815 0.48 +1.0
184,742 + AO356_00815 0.48 -0.5
184,742 + AO356_00815 0.48 -0.8
184,742 + AO356_00815 0.48 -0.9
184,749 - AO356_00815 0.48 +0.5
184,811 + AO356_00815 0.51 +0.4
184,811 + AO356_00815 0.51 -1.5
184,811 + AO356_00815 0.51 +0.5
184,827 + AO356_00815 0.52 +0.3
184,897 + AO356_00815 0.56 +0.7
184,910 + AO356_00815 0.56 +0.0
184,910 + AO356_00815 0.56 +0.9
184,911 - AO356_00815 0.56 -0.4
184,911 - AO356_00815 0.56 +0.3
184,997 + AO356_00815 0.61 +0.1
184,998 - AO356_00815 0.61 +0.2
184,998 - AO356_00815 0.61 +0.3
185,073 - AO356_00815 0.64 +0.2
185,132 + AO356_00815 0.67 -0.1
185,132 + AO356_00815 0.67 +0.3
185,132 + AO356_00815 0.67 -0.6
185,132 + AO356_00815 0.67 +0.8
185,133 - AO356_00815 0.67 -0.2
185,133 - AO356_00815 0.67 +0.0
185,133 - AO356_00815 0.67 +1.1
185,133 - AO356_00815 0.67 -0.8
185,219 + AO356_00815 0.72 -0.3
185,219 + AO356_00815 0.72 +1.7
185,219 + AO356_00815 0.72 +0.6
185,254 - AO356_00815 0.73 -0.3
185,374 + AO356_00815 0.79 -0.3
185,389 + AO356_00815 0.80 +0.0
185,438 + AO356_00815 0.82 -0.1
185,438 + AO356_00815 0.82 +1.0
185,438 + AO356_00815 0.82 +1.3
185,439 - AO356_00815 0.82 -0.3
185,439 - AO356_00815 0.82 +0.6
185,441 + AO356_00815 0.82 +0.8
185,444 + AO356_00815 0.83 +2.4
185,445 - AO356_00815 0.83 +0.6
185,445 - AO356_00815 0.83 -0.6
185,498 + AO356_00815 0.85 +1.4
185,498 + AO356_00815 0.85 -0.8
185,498 + AO356_00815 0.85 -0.0
185,498 + AO356_00815 0.85 -1.1
185,498 + AO356_00815 0.85 +0.3
185,498 + AO356_00815 0.85 -0.1
185,498 + AO356_00815 0.85 +0.7
185,498 + AO356_00815 0.85 +0.2
185,498 + AO356_00815 0.85 +0.4
185,498 + AO356_00815 0.85 +0.1
185,498 + AO356_00815 0.85 -0.7
185,498 + AO356_00815 0.85 +0.3
185,498 + AO356_00815 0.85 -0.4
185,499 - AO356_00815 0.85 -0.7
185,499 - AO356_00815 0.85 +0.7
185,499 - AO356_00815 0.85 +0.7
185,499 - AO356_00815 0.85 -0.5
185,499 - AO356_00815 0.85 +0.3
185,499 - AO356_00815 0.85 +0.6
185,499 - AO356_00815 0.85 -0.1
185,499 - AO356_00815 0.85 +1.0
185,533 + AO356_00815 0.87 +0.5
185,708 + +0.5
185,714 + +0.4
185,715 - -0.6
185,724 - +0.5
185,724 - +0.2
185,881 - +0.7
185,881 - +0.3
185,997 + AO356_00820 0.20 +0.4
185,997 + AO356_00820 0.20 -0.7
185,998 - AO356_00820 0.20 +0.2
185,998 - AO356_00820 0.20 -0.8
186,075 + AO356_00820 0.27 -0.6
186,075 + AO356_00820 0.27 +0.3
186,076 - AO356_00820 0.27 +1.7
186,099 + AO356_00820 0.30 +0.7
186,099 + AO356_00820 0.30 +0.7
186,100 - AO356_00820 0.30 +0.4
186,144 + AO356_00820 0.34 -0.1
186,144 + AO356_00820 0.34 -0.8
186,145 - AO356_00820 0.34 -0.0
186,470 + AO356_00820 0.65 +0.0
186,471 - AO356_00820 0.65 +1.1
186,471 - AO356_00820 0.65 +0.4
186,471 - AO356_00820 0.65 +0.4
186,471 - AO356_00820 0.65 +1.0
186,721 + AO356_00820 0.89 +0.1
186,721 + AO356_00820 0.89 +0.7

Or see this region's nucleotide sequence