Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2941

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2939 and DvMF_2940 are separated by 276 nucleotidesDvMF_2940 and DvMF_2941 are separated by 171 nucleotidesDvMF_2941 and panC are separated by 134 nucleotides DvMF_2939: DvMF_2939 - response regulator receiver modulated CheW protein (RefSeq), at 3,710,745 to 3,711,716 _2939 DvMF_2940: DvMF_2940 - type IV pilus assembly PilZ (RefSeq), at 3,711,993 to 3,712,325 _2940 DvMF_2941: DvMF_2941 - S-adenosylmethionine synthetase (RefSeq), at 3,712,497 to 3,713,666 _2941 DvMF_2942: panC - pantoate--beta-alanine ligase (RefSeq), at 3,713,801 to 3,714,652 panC Position (kb) 3712 3713 3714Strain fitness (log2 ratio) -1 0 1at 3711.709 kb on - strandat 3712.201 kb on + strand, within DvMF_2940at 3712.214 kb on + strand, within DvMF_2940at 3712.476 kb on - strandat 3713.730 kb on - strandat 3713.775 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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3,711,709 - -0.4
3,712,201 + DvMF_2940 0.62 -0.7
3,712,214 + DvMF_2940 0.66 -0.4
3,712,476 - +0.6
3,713,730 - -0.5
3,713,775 + -0.9

Or see this region's nucleotide sequence