Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2840 and DvMF_2841 are separated by 498 nucleotides DvMF_2841 and DvMF_2842 are separated by 219 nucleotides DvMF_2842 and DvMF_2843 are separated by 179 nucleotides
DvMF_2840: DvMF_2840 - diguanylate phosphodiesterase (RefSeq), at 3,587,862 to 3,589,073
_2840
DvMF_2841: DvMF_2841 - response regulator receiver protein (RefSeq), at 3,589,572 to 3,590,009
_2841
DvMF_2842: DvMF_2842 - hypothetical protein (RefSeq), at 3,590,229 to 3,590,525
_2842
DvMF_2843: DvMF_2843 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,590,705 to 3,592,348
_2843
Position (kb)
3589
3590
3591 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3588.833 kb on - strand, within DvMF_2840 at 3589.344 kb on - strand at 3589.506 kb on - strand at 3589.698 kb on + strand, within DvMF_2841 at 3589.717 kb on + strand, within DvMF_2841 at 3589.817 kb on - strand, within DvMF_2841 at 3589.820 kb on - strand, within DvMF_2841 at 3590.198 kb on + strand at 3590.242 kb on + strand at 3590.439 kb on - strand, within DvMF_2842 at 3590.451 kb on - strand, within DvMF_2842 at 3590.454 kb on + strand, within DvMF_2842 at 3590.471 kb on + strand, within DvMF_2842 at 3590.511 kb on - strand at 3590.539 kb on - strand at 3590.875 kb on + strand, within DvMF_2843 at 3590.883 kb on - strand, within DvMF_2843 at 3590.942 kb on - strand, within DvMF_2843 at 3590.978 kb on - strand, within DvMF_2843
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 3,588,833 - DvMF_2840 0.80 -0.4 3,589,344 - -1.7 3,589,506 - -0.9 3,589,698 + DvMF_2841 0.29 -2.1 3,589,717 + DvMF_2841 0.33 -1.1 3,589,817 - DvMF_2841 0.56 -2.0 3,589,820 - DvMF_2841 0.57 -0.7 3,590,198 + -0.6 3,590,242 + -0.3 3,590,439 - DvMF_2842 0.71 -2.8 3,590,451 - DvMF_2842 0.75 -0.0 3,590,454 + DvMF_2842 0.76 +0.1 3,590,471 + DvMF_2842 0.81 -0.1 3,590,511 - +0.2 3,590,539 - +0.3 3,590,875 + DvMF_2843 0.10 -0.4 3,590,883 - DvMF_2843 0.11 +0.2 3,590,942 - DvMF_2843 0.14 -1.0 3,590,978 - DvMF_2843 0.17 -0.2
Or see this region's nucleotide sequence