Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2790 and DvMF_2791 are separated by 256 nucleotides DvMF_2791 and DvMF_2792 are separated by 206 nucleotides DvMF_2792 and DvMF_2793 are separated by 153 nucleotides
DvMF_2790: DvMF_2790 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,533,449 to 3,534,366
_2790
DvMF_2791: DvMF_2791 - type IV pilus assembly PilZ (RefSeq), at 3,534,623 to 3,534,955
_2791
DvMF_2792: DvMF_2792 - YceI family protein (RefSeq), at 3,535,162 to 3,536,106
_2792
DvMF_2793: DvMF_2793 - Pirin domain protein (RefSeq), at 3,536,260 to 3,537,198
_2793
Position (kb)
3535
3536
3537 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3534.196 kb on - strand, within DvMF_2790 at 3534.260 kb on + strand, within DvMF_2790 at 3534.268 kb on - strand, within DvMF_2790 at 3534.515 kb on + strand at 3534.683 kb on - strand, within DvMF_2791 at 3534.809 kb on - strand, within DvMF_2791 at 3534.811 kb on + strand, within DvMF_2791 at 3534.843 kb on - strand, within DvMF_2791 at 3534.873 kb on - strand, within DvMF_2791 at 3534.910 kb on - strand, within DvMF_2791 at 3535.285 kb on + strand, within DvMF_2792 at 3535.297 kb on + strand, within DvMF_2792 at 3535.632 kb on + strand, within DvMF_2792 at 3535.805 kb on - strand, within DvMF_2792 at 3535.905 kb on - strand, within DvMF_2792 at 3536.223 kb on - strand at 3536.493 kb on + strand, within DvMF_2793 at 3536.493 kb on + strand, within DvMF_2793 at 3536.530 kb on - strand, within DvMF_2793 at 3536.700 kb on - strand, within DvMF_2793 at 3536.876 kb on + strand, within DvMF_2793 at 3536.923 kb on - strand, within DvMF_2793 at 3536.991 kb on + strand, within DvMF_2793 at 3537.084 kb on + strand, within DvMF_2793
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 3,534,196 - DvMF_2790 0.81 -1.0 3,534,260 + DvMF_2790 0.88 +0.2 3,534,268 - DvMF_2790 0.89 -1.3 3,534,515 + +0.3 3,534,683 - DvMF_2791 0.18 -0.7 3,534,809 - DvMF_2791 0.56 -3.1 3,534,811 + DvMF_2791 0.56 +0.3 3,534,843 - DvMF_2791 0.66 -0.2 3,534,873 - DvMF_2791 0.75 -2.3 3,534,910 - DvMF_2791 0.86 -1.1 3,535,285 + DvMF_2792 0.13 +0.0 3,535,297 + DvMF_2792 0.14 -0.6 3,535,632 + DvMF_2792 0.50 -0.5 3,535,805 - DvMF_2792 0.68 -0.3 3,535,905 - DvMF_2792 0.79 -0.3 3,536,223 - -0.8 3,536,493 + DvMF_2793 0.25 -1.4 3,536,493 + DvMF_2793 0.25 -4.1 3,536,530 - DvMF_2793 0.29 -1.7 3,536,700 - DvMF_2793 0.47 -4.2 3,536,876 + DvMF_2793 0.66 +0.0 3,536,923 - DvMF_2793 0.71 -0.9 3,536,991 + DvMF_2793 0.78 +0.7 3,537,084 + DvMF_2793 0.88 -0.6
Or see this region's nucleotide sequence