Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2644

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2643 and DvMF_2644 are separated by 800 nucleotidesDvMF_2644 and DvMF_2645 are separated by 110 nucleotides DvMF_2643: DvMF_2643 - response regulator receiver modulated CheW protein (RefSeq), at 3,343,209 to 3,344,381 _2643 DvMF_2644: DvMF_2644 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,345,182 to 3,347,155 _2644 DvMF_2645: DvMF_2645 - peptidase U32 (RefSeq), at 3,347,266 to 3,348,558 _2645 Position (kb) 3345 3346 3347 3348Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3344.248 kb on - strand, within DvMF_2643at 3344.344 kb on + strandat 3344.461 kb on - strandat 3344.626 kb on - strandat 3345.458 kb on - strand, within DvMF_2644at 3345.678 kb on + strand, within DvMF_2644at 3345.693 kb on + strand, within DvMF_2644at 3345.712 kb on + strand, within DvMF_2644at 3345.901 kb on + strand, within DvMF_2644at 3346.072 kb on - strand, within DvMF_2644at 3346.283 kb on - strand, within DvMF_2644at 3346.382 kb on - strand, within DvMF_2644at 3346.466 kb on - strand, within DvMF_2644at 3346.748 kb on - strand, within DvMF_2644at 3346.838 kb on - strand, within DvMF_2644at 3346.854 kb on + strand, within DvMF_2644at 3346.902 kb on - strand, within DvMF_2644at 3347.081 kb on + strandat 3347.311 kb on + strandat 3347.317 kb on - strandat 3347.432 kb on - strand, within DvMF_2645at 3347.516 kb on - strand, within DvMF_2645at 3347.924 kb on - strand, within DvMF_2645at 3348.026 kb on + strand, within DvMF_2645at 3348.098 kb on + strand, within DvMF_2645

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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3,344,248 - DvMF_2643 0.89 +0.5
3,344,344 + -0.3
3,344,461 - -0.4
3,344,626 - -0.9
3,345,458 - DvMF_2644 0.14 -0.8
3,345,678 + DvMF_2644 0.25 -3.5
3,345,693 + DvMF_2644 0.26 -2.6
3,345,712 + DvMF_2644 0.27 -1.9
3,345,901 + DvMF_2644 0.36 -4.8
3,346,072 - DvMF_2644 0.45 -2.2
3,346,283 - DvMF_2644 0.56 -2.1
3,346,382 - DvMF_2644 0.61 -2.5
3,346,466 - DvMF_2644 0.65 -1.6
3,346,748 - DvMF_2644 0.79 -2.5
3,346,838 - DvMF_2644 0.84 -2.3
3,346,854 + DvMF_2644 0.85 -3.1
3,346,902 - DvMF_2644 0.87 -1.7
3,347,081 + +0.3
3,347,311 + -0.0
3,347,317 - -1.2
3,347,432 - DvMF_2645 0.13 -0.4
3,347,516 - DvMF_2645 0.19 -0.1
3,347,924 - DvMF_2645 0.51 -0.6
3,348,026 + DvMF_2645 0.59 -0.4
3,348,098 + DvMF_2645 0.64 -3.4

Or see this region's nucleotide sequence