Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2244

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2243 and DvMF_2244 are separated by 425 nucleotidesDvMF_2244 and DvMF_2245 are separated by 91 nucleotidesDvMF_2245 and DvMF_2246 are separated by 196 nucleotides DvMF_2243: DvMF_2243 - AMP-dependent synthetase and ligase (RefSeq), at 2,816,990 to 2,818,678 _2243 DvMF_2244: DvMF_2244 - Stress responsive alpha-beta barrel domain protein (RefSeq), at 2,819,104 to 2,819,409 _2244 DvMF_2245: DvMF_2245 - Methyltransferase type 11 (RefSeq), at 2,819,501 to 2,820,139 _2245 DvMF_2246: DvMF_2246 - transcriptional regulator, LysR family (RefSeq), at 2,820,336 to 2,821,301 _2246 Position (kb) 2819 2820Strain fitness (log2 ratio) -3 -2 -1 0 1at 2818.118 kb on + strand, within DvMF_2243at 2818.808 kb on + strandat 2818.816 kb on - strandat 2818.824 kb on + strandat 2818.994 kb on + strandat 2819.022 kb on + strandat 2819.228 kb on + strand, within DvMF_2244at 2819.228 kb on + strand, within DvMF_2244at 2819.243 kb on + strand, within DvMF_2244at 2819.319 kb on + strand, within DvMF_2244at 2819.412 kb on - strandat 2819.709 kb on - strand, within DvMF_2245at 2819.709 kb on - strand, within DvMF_2245at 2819.719 kb on - strand, within DvMF_2245at 2820.279 kb on + strandat 2820.312 kb on - strandat 2820.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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2,818,118 + DvMF_2243 0.67 -1.7
2,818,808 + -2.5
2,818,816 - -0.8
2,818,824 + -0.7
2,818,994 + -1.2
2,819,022 + -1.0
2,819,228 + DvMF_2244 0.41 -0.8
2,819,228 + DvMF_2244 0.41 -0.4
2,819,243 + DvMF_2244 0.45 -0.5
2,819,319 + DvMF_2244 0.70 -1.6
2,819,412 - -2.2
2,819,709 - DvMF_2245 0.33 -0.7
2,819,709 - DvMF_2245 0.33 -0.8
2,819,719 - DvMF_2245 0.34 -0.8
2,820,279 + -1.0
2,820,312 - -0.7
2,820,384 + -2.8

Or see this region's nucleotide sequence