Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2232

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2230 and DvMF_2231 are separated by 155 nucleotidesDvMF_2231 and DvMF_2232 are separated by 102 nucleotidesDvMF_2232 and DvMF_2233 are separated by 336 nucleotides DvMF_2230: DvMF_2230 - hydrolase, TatD family (RefSeq), at 2,791,493 to 2,792,314 _2230 DvMF_2231: DvMF_2231 - protein of unknown function DUF309 (RefSeq), at 2,792,470 to 2,792,892 _2231 DvMF_2232: DvMF_2232 - carbon monoxide dehydrogenase accessory protein CooC, putative (RefSeq), at 2,792,995 to 2,793,846 _2232 DvMF_2233: DvMF_2233 - carbon-monoxide dehydrogenase, catalytic subunit (RefSeq), at 2,794,183 to 2,796,072 _2233 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -3 -2 -1 0 1at 2792.309 kb on + strandat 2792.473 kb on - strandat 2792.598 kb on - strand, within DvMF_2231at 2792.637 kb on + strand, within DvMF_2231at 2792.823 kb on + strand, within DvMF_2231at 2793.013 kb on - strandat 2793.108 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.276 kb on + strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.284 kb on - strand, within DvMF_2232at 2793.291 kb on - strand, within DvMF_2232at 2793.466 kb on - strand, within DvMF_2232at 2793.565 kb on + strand, within DvMF_2232at 2793.624 kb on + strand, within DvMF_2232at 2793.708 kb on - strand, within DvMF_2232at 2793.727 kb on - strand, within DvMF_2232at 2793.975 kb on + strandat 2794.004 kb on + strandat 2794.023 kb on + strandat 2794.074 kb on - strandat 2794.446 kb on + strand, within DvMF_2233at 2794.489 kb on - strand, within DvMF_2233

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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2,792,309 + -0.1
2,792,473 - -0.6
2,792,598 - DvMF_2231 0.30 -3.7
2,792,637 + DvMF_2231 0.39 +0.1
2,792,823 + DvMF_2231 0.83 -0.6
2,793,013 - -0.4
2,793,108 + DvMF_2232 0.13 -0.2
2,793,276 + DvMF_2232 0.33 +0.3
2,793,276 + DvMF_2232 0.33 -0.9
2,793,276 + DvMF_2232 0.33 -0.3
2,793,284 - DvMF_2232 0.34 -1.6
2,793,284 - DvMF_2232 0.34 -0.9
2,793,284 - DvMF_2232 0.34 -0.1
2,793,284 - DvMF_2232 0.34 -0.4
2,793,284 - DvMF_2232 0.34 +1.5
2,793,284 - DvMF_2232 0.34 +0.5
2,793,284 - DvMF_2232 0.34 -2.8
2,793,291 - DvMF_2232 0.35 -0.2
2,793,466 - DvMF_2232 0.55 -0.0
2,793,565 + DvMF_2232 0.67 +0.4
2,793,624 + DvMF_2232 0.74 -2.1
2,793,708 - DvMF_2232 0.84 -0.9
2,793,727 - DvMF_2232 0.86 -0.8
2,793,975 + -0.7
2,794,004 + -0.6
2,794,023 + +0.6
2,794,074 - -1.8
2,794,446 + DvMF_2233 0.14 +1.6
2,794,489 - DvMF_2233 0.16 -1.9

Or see this region's nucleotide sequence