Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2151

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2150 and DvMF_2151 are separated by 309 nucleotidesDvMF_2151 and DvMF_2152 are separated by 548 nucleotides DvMF_2150: DvMF_2150 - glycosyl transferase family 2 (RefSeq), at 2,679,362 to 2,680,270 _2150 DvMF_2151: DvMF_2151 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,680,580 to 2,681,272 _2151 DvMF_2152: DvMF_2152 - thioesterase superfamily protein (RefSeq), at 2,681,821 to 2,682,255 _2152 Position (kb) 2680 2681 2682Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2679.847 kb on + strand, within DvMF_2150at 2679.984 kb on + strand, within DvMF_2150at 2680.189 kb on - strandat 2680.228 kb on + strandat 2680.387 kb on - strandat 2680.777 kb on + strand, within DvMF_2151at 2680.818 kb on + strand, within DvMF_2151at 2680.844 kb on - strand, within DvMF_2151at 2681.008 kb on - strand, within DvMF_2151at 2681.258 kb on + strandat 2681.288 kb on + strandat 2681.326 kb on + strandat 2681.334 kb on - strandat 2681.349 kb on - strandat 2681.484 kb on + strandat 2681.492 kb on - strandat 2681.525 kb on - strandat 2681.654 kb on - strandat 2681.656 kb on + strandat 2682.029 kb on - strand, within DvMF_2152at 2682.265 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
remove
2,679,847 + DvMF_2150 0.53 -4.2
2,679,984 + DvMF_2150 0.68 +0.7
2,680,189 - -0.8
2,680,228 + -1.2
2,680,387 - +0.0
2,680,777 + DvMF_2151 0.28 +0.4
2,680,818 + DvMF_2151 0.34 -4.5
2,680,844 - DvMF_2151 0.38 -2.0
2,681,008 - DvMF_2151 0.62 -2.5
2,681,258 + +0.0
2,681,288 + -0.7
2,681,326 + -1.0
2,681,334 - -0.4
2,681,349 - -0.7
2,681,484 + -1.8
2,681,492 - -0.7
2,681,525 - -0.1
2,681,654 - -1.0
2,681,656 + -0.7
2,682,029 - DvMF_2152 0.48 +0.2
2,682,265 + -0.6

Or see this region's nucleotide sequence