Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2055 and DvMF_2056 overlap by 1 nucleotides DvMF_2056 and DvMF_2057 overlap by 1 nucleotides DvMF_2057 and DvMF_2058 are separated by 210 nucleotides
DvMF_2055: DvMF_2055 - 2-ketoisovalerate ferredoxin reductase (RefSeq), at 2,547,279 to 2,548,364
_2055
DvMF_2056: DvMF_2056 - thiamine pyrophosphate protein domain protein TPP-binding (RefSeq), at 2,548,364 to 2,549,155
_2056
DvMF_2057: DvMF_2057 - pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq), at 2,549,155 to 2,549,697
_2057
DvMF_2058: DvMF_2058 - putative superfamily I DNA and RNA helicase protein (RefSeq), at 2,549,908 to 2,555,493
_2058
Position (kb)
2549
2550 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2548.223 kb on + strand, within DvMF_2055 at 2548.356 kb on - strand at 2548.430 kb on + strand at 2548.518 kb on + strand, within DvMF_2056 at 2548.987 kb on - strand, within DvMF_2056 at 2549.221 kb on + strand, within DvMF_2057 at 2549.409 kb on - strand, within DvMF_2057 at 2549.419 kb on - strand, within DvMF_2057 at 2549.434 kb on + strand, within DvMF_2057 at 2549.434 kb on + strand, within DvMF_2057 at 2549.451 kb on + strand, within DvMF_2057 at 2549.523 kb on + strand, within DvMF_2057 at 2550.018 kb on + strand at 2550.300 kb on - strand at 2550.300 kb on - strand at 2550.604 kb on + strand, within DvMF_2058
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 2,548,223 + DvMF_2055 0.87 -0.7 2,548,356 - -3.3 2,548,430 + -2.4 2,548,518 + DvMF_2056 0.19 -1.0 2,548,987 - DvMF_2056 0.79 -0.6 2,549,221 + DvMF_2057 0.12 -1.5 2,549,409 - DvMF_2057 0.47 +0.3 2,549,419 - DvMF_2057 0.49 +0.3 2,549,434 + DvMF_2057 0.51 -2.4 2,549,434 + DvMF_2057 0.51 -1.3 2,549,451 + DvMF_2057 0.55 -2.1 2,549,523 + DvMF_2057 0.68 -0.3 2,550,018 + -1.7 2,550,300 - -0.3 2,550,300 - -0.6 2,550,604 + DvMF_2058 0.12 -0.9
Or see this region's nucleotide sequence