Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt potC and DvMF_1959 are separated by 1 nucleotides DvMF_1959 and potA overlap by 14 nucleotides
DvMF_1958: potC - spermidine/putrescine ABC transporter membrane protein (RefSeq), at 2,419,854 to 2,420,654
potC
DvMF_1959: DvMF_1959 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,420,656 to 2,421,624
_1959
DvMF_1960: potA - putrescine/spermidine ABC transporter ATPase protein (RefSeq), at 2,421,611 to 2,422,810
potA
Position (kb)
2421
2422
2423 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2420.656 kb on - strand at 2420.668 kb on - strand at 2420.787 kb on + strand, within DvMF_1959 at 2420.850 kb on - strand, within DvMF_1959 at 2421.324 kb on + strand, within DvMF_1959 at 2421.336 kb on + strand, within DvMF_1959 at 2421.497 kb on - strand, within DvMF_1959 at 2421.608 kb on + strand at 2421.608 kb on + strand at 2421.758 kb on - strand, within potA at 2422.062 kb on + strand, within potA at 2422.357 kb on - strand, within potA at 2422.473 kb on - strand, within potA at 2422.551 kb on + strand, within potA at 2422.579 kb on + strand, within potA at 2422.729 kb on + strand at 2422.737 kb on - strand at 2422.801 kb on + strand at 2422.843 kb on + strand at 2422.896 kb on - strand at 2422.953 kb on - strand at 2423.170 kb on + strand at 2423.349 kb on + strand at 2423.394 kb on + strand at 2423.484 kb on + strand at 2423.493 kb on - strand at 2423.627 kb on + strand at 2423.637 kb on + strand at 2423.637 kb on + strand at 2423.637 kb on + strand at 2423.724 kb on - strand at 2423.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 2,420,656 - +0.3 2,420,668 - -0.7 2,420,787 + DvMF_1959 0.14 -0.8 2,420,850 - DvMF_1959 0.20 -0.9 2,421,324 + DvMF_1959 0.69 +0.6 2,421,336 + DvMF_1959 0.70 -0.0 2,421,497 - DvMF_1959 0.87 -0.2 2,421,608 + -1.7 2,421,608 + -2.7 2,421,758 - potA DvMF_1960 0.12 -1.1 2,422,062 + potA DvMF_1960 0.38 +0.0 2,422,357 - potA DvMF_1960 0.62 -0.7 2,422,473 - potA DvMF_1960 0.72 -0.3 2,422,551 + potA DvMF_1960 0.78 -0.4 2,422,579 + potA DvMF_1960 0.81 -0.7 2,422,729 + -2.9 2,422,737 - +0.5 2,422,801 + -0.8 2,422,843 + -0.9 2,422,896 - -0.8 2,422,953 - -1.4 2,423,170 + -1.5 2,423,349 + -0.7 2,423,394 + +0.6 2,423,484 + -1.0 2,423,493 - -0.5 2,423,627 + -1.5 2,423,637 + -0.2 2,423,637 + -1.6 2,423,637 + -0.0 2,423,724 - -3.9 2,423,808 + -0.7
Or see this region's nucleotide sequence