Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1925

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1924 and DvMF_1925 overlap by 16 nucleotidesDvMF_1925 and DvMF_1926 are separated by 434 nucleotidesDvMF_1926 and DvMF_1927 are separated by 73 nucleotides DvMF_1924: DvMF_1924 - ABC transporter related (RefSeq), at 2,372,553 to 2,373,755 _1924 DvMF_1925: DvMF_1925 - aminoglycoside phosphotransferase (RefSeq), at 2,373,740 to 2,375,062 _1925 DvMF_1926: DvMF_1926 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,375,497 to 2,375,838 _1926 DvMF_1927: DvMF_1927 - glycosyl transferase family 2 (RefSeq), at 2,375,912 to 2,377,843 _1927 Position (kb) 2373 2374 2375 2376Strain fitness (log2 ratio) -3 -2 -1 0 1at 2373.120 kb on - strand, within DvMF_1924at 2373.306 kb on + strand, within DvMF_1924at 2373.411 kb on + strand, within DvMF_1924at 2373.424 kb on - strand, within DvMF_1924at 2373.475 kb on - strand, within DvMF_1924at 2373.489 kb on + strand, within DvMF_1924at 2373.544 kb on + strand, within DvMF_1924at 2373.552 kb on - strand, within DvMF_1924at 2373.792 kb on - strandat 2373.931 kb on + strand, within DvMF_1925at 2373.946 kb on + strand, within DvMF_1925at 2373.949 kb on - strand, within DvMF_1925at 2374.015 kb on + strand, within DvMF_1925at 2374.136 kb on - strand, within DvMF_1925at 2374.384 kb on + strand, within DvMF_1925at 2374.722 kb on - strand, within DvMF_1925at 2374.973 kb on - strandat 2375.478 kb on + strandat 2375.491 kb on - strandat 2375.570 kb on - strand, within DvMF_1926at 2375.594 kb on - strand, within DvMF_1926at 2375.823 kb on + strandat 2375.895 kb on + strandat 2375.925 kb on + strandat 2376.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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2,373,120 - DvMF_1924 0.47 -0.2
2,373,306 + DvMF_1924 0.63 -0.1
2,373,411 + DvMF_1924 0.71 -0.4
2,373,424 - DvMF_1924 0.72 -0.6
2,373,475 - DvMF_1924 0.77 -3.1
2,373,489 + DvMF_1924 0.78 -0.9
2,373,544 + DvMF_1924 0.82 +0.1
2,373,552 - DvMF_1924 0.83 -1.2
2,373,792 - -0.6
2,373,931 + DvMF_1925 0.14 -2.6
2,373,946 + DvMF_1925 0.16 -1.2
2,373,949 - DvMF_1925 0.16 -0.8
2,374,015 + DvMF_1925 0.21 -1.6
2,374,136 - DvMF_1925 0.30 -0.5
2,374,384 + DvMF_1925 0.49 -0.9
2,374,722 - DvMF_1925 0.74 +0.5
2,374,973 - -0.2
2,375,478 + -1.2
2,375,491 - -1.3
2,375,570 - DvMF_1926 0.21 -0.6
2,375,594 - DvMF_1926 0.28 -0.8
2,375,823 + +0.5
2,375,895 + -0.8
2,375,925 + -0.6
2,376,025 - -1.1

Or see this region's nucleotide sequence