Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1654

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1651 and DvMF_1652 overlap by 1 nucleotidesDvMF_1652 and DvMF_1653 are separated by 2 nucleotidesDvMF_1653 and DvMF_1654 overlap by 4 nucleotidesDvMF_1654 and DvMF_1655 are separated by 45 nucleotides DvMF_1651: DvMF_1651 - hypothetical protein (RefSeq), at 2,030,300 to 2,030,698 _1651 DvMF_1652: DvMF_1652 - phage head-tail adaptor (RefSeq), at 2,030,698 to 2,031,012 _1652 DvMF_1653: DvMF_1653 - phage conserved hypothetical protein, phiE125 gp8 (RefSeq), at 2,031,015 to 2,031,599 _1653 DvMF_1654: DvMF_1654 - hypothetical protein (RefSeq), at 2,031,596 to 2,031,775 _1654 DvMF_1655: DvMF_1655 - phage major capsid protein, HK97 family (RefSeq), at 2,031,821 to 2,033,041 _1655 Position (kb) 2031 2032Strain fitness (log2 ratio) -3 -2 -1 0 1at 2030.743 kb on + strand, within DvMF_1652at 2030.743 kb on + strand, within DvMF_1652at 2030.900 kb on + strand, within DvMF_1652at 2030.917 kb on - strand, within DvMF_1652at 2031.032 kb on + strandat 2031.108 kb on - strand, within DvMF_1653at 2031.277 kb on + strand, within DvMF_1653at 2031.304 kb on - strand, within DvMF_1653at 2031.310 kb on + strand, within DvMF_1653at 2031.489 kb on - strand, within DvMF_1653at 2031.529 kb on - strand, within DvMF_1653at 2031.538 kb on + strand, within DvMF_1653at 2031.538 kb on + strand, within DvMF_1653at 2031.546 kb on - strandat 2031.604 kb on + strandat 2031.660 kb on + strand, within DvMF_1654at 2031.660 kb on + strand, within DvMF_1654at 2031.660 kb on + strand, within DvMF_1654at 2032.047 kb on - strand, within DvMF_1655at 2032.079 kb on - strand, within DvMF_1655at 2032.483 kb on - strand, within DvMF_1655at 2032.613 kb on + strand, within DvMF_1655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
remove
2,030,743 + DvMF_1652 0.14 -1.7
2,030,743 + DvMF_1652 0.14 +1.3
2,030,900 + DvMF_1652 0.64 -0.8
2,030,917 - DvMF_1652 0.70 +1.4
2,031,032 + -0.3
2,031,108 - DvMF_1653 0.16 -0.2
2,031,277 + DvMF_1653 0.45 -0.8
2,031,304 - DvMF_1653 0.49 +0.0
2,031,310 + DvMF_1653 0.50 +0.3
2,031,489 - DvMF_1653 0.81 +0.1
2,031,529 - DvMF_1653 0.88 -0.8
2,031,538 + DvMF_1653 0.89 -1.7
2,031,538 + DvMF_1653 0.89 -0.8
2,031,546 - -3.1
2,031,604 + -0.5
2,031,660 + DvMF_1654 0.36 -1.8
2,031,660 + DvMF_1654 0.36 -1.0
2,031,660 + DvMF_1654 0.36 -0.3
2,032,047 - DvMF_1655 0.19 +0.1
2,032,079 - DvMF_1655 0.21 -0.3
2,032,483 - DvMF_1655 0.54 -1.8
2,032,613 + DvMF_1655 0.65 -0.4

Or see this region's nucleotide sequence