Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1646

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1645 and DvMF_1646 are separated by 249 nucleotidesDvMF_1646 and DvMF_1647 are separated by 163 nucleotidesDvMF_1647 and DvMF_1648 are separated by 23 nucleotidesDvMF_1648 and DvMF_1649 are separated by 10 nucleotides DvMF_1645: DvMF_1645 - prophage antirepressor (RefSeq), at 2,026,839 to 2,027,723 _1645 DvMF_1646: DvMF_1646 - phage protein (RefSeq), at 2,027,973 to 2,028,872 _1646 DvMF_1647: DvMF_1647 - no description, at 2,029,036 to 2,029,128 _1647 DvMF_1648: DvMF_1648 - hypothetical protein (RefSeq), at 2,029,152 to 2,029,499 _1648 DvMF_1649: DvMF_1649 - hypothetical protein (RefSeq), at 2,029,510 to 2,029,929 _1649 Position (kb) 2027 2028 2029Strain fitness (log2 ratio) -2 -1 0 1at 2027.000 kb on + strand, within DvMF_1645at 2027.064 kb on - strand, within DvMF_1645at 2027.129 kb on + strand, within DvMF_1645at 2027.167 kb on - strand, within DvMF_1645at 2027.253 kb on - strand, within DvMF_1645at 2027.355 kb on + strand, within DvMF_1645at 2027.417 kb on - strand, within DvMF_1645at 2027.779 kb on - strandat 2027.779 kb on - strandat 2027.791 kb on - strandat 2027.791 kb on - strandat 2027.824 kb on - strandat 2027.983 kb on - strandat 2028.103 kb on - strand, within DvMF_1646at 2028.158 kb on - strand, within DvMF_1646at 2028.833 kb on + strandat 2028.883 kb on - strandat 2029.025 kb on - strandat 2029.259 kb on - strand, within DvMF_1648at 2029.430 kb on + strand, within DvMF_1648at 2029.471 kb on + strandat 2029.626 kb on - strand, within DvMF_1649

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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2,027,000 + DvMF_1645 0.18 -1.5
2,027,064 - DvMF_1645 0.25 -0.8
2,027,129 + DvMF_1645 0.33 +0.2
2,027,167 - DvMF_1645 0.37 +0.5
2,027,253 - DvMF_1645 0.47 -0.0
2,027,355 + DvMF_1645 0.58 -0.2
2,027,417 - DvMF_1645 0.65 -0.1
2,027,779 - -0.6
2,027,779 - -0.3
2,027,791 - -0.4
2,027,791 - -1.2
2,027,824 - -0.9
2,027,983 - +1.3
2,028,103 - DvMF_1646 0.14 -1.7
2,028,158 - DvMF_1646 0.21 -2.4
2,028,833 + -1.9
2,028,883 - -0.4
2,029,025 - -0.7
2,029,259 - DvMF_1648 0.31 -0.7
2,029,430 + DvMF_1648 0.80 -0.7
2,029,471 + -2.3
2,029,626 - DvMF_1649 0.28 -0.4

Or see this region's nucleotide sequence