Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1586

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1585 and DvMF_1586 are separated by 374 nucleotidesDvMF_1586 and DvMF_1587 are separated by 169 nucleotides DvMF_1585: DvMF_1585 - CBS domain containing protein (RefSeq), at 1,953,720 to 1,954,373 _1585 DvMF_1586: DvMF_1586 - extracellular solute-binding protein family 1 (RefSeq), at 1,954,748 to 1,955,749 _1586 DvMF_1587: DvMF_1587 - ABC transporter related (RefSeq), at 1,955,919 to 1,957,019 _1587 Position (kb) 1954 1955 1956Strain fitness (log2 ratio) -2 -1 0 1at 1953.757 kb on - strandat 1953.935 kb on + strand, within DvMF_1585at 1954.248 kb on - strand, within DvMF_1585at 1954.476 kb on - strandat 1954.595 kb on + strandat 1954.663 kb on + strandat 1954.697 kb on + strandat 1954.732 kb on + strandat 1954.822 kb on - strandat 1955.458 kb on - strand, within DvMF_1586at 1955.500 kb on + strand, within DvMF_1586at 1955.508 kb on - strand, within DvMF_1586at 1955.562 kb on - strand, within DvMF_1586at 1955.918 kb on - strandat 1955.926 kb on + strandat 1955.933 kb on - strandat 1955.934 kb on - strandat 1955.951 kb on + strandat 1955.980 kb on + strandat 1956.056 kb on - strand, within DvMF_1587at 1956.171 kb on - strand, within DvMF_1587at 1956.270 kb on + strand, within DvMF_1587at 1956.270 kb on + strand, within DvMF_1587at 1956.490 kb on + strand, within DvMF_1587

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
remove
1,953,757 - -0.5
1,953,935 + DvMF_1585 0.33 -1.5
1,954,248 - DvMF_1585 0.81 +1.1
1,954,476 - -0.8
1,954,595 + +0.7
1,954,663 + -0.4
1,954,697 + -1.2
1,954,732 + -1.4
1,954,822 - -0.8
1,955,458 - DvMF_1586 0.71 -1.0
1,955,500 + DvMF_1586 0.75 -1.3
1,955,508 - DvMF_1586 0.76 -0.8
1,955,562 - DvMF_1586 0.81 -0.2
1,955,918 - -0.6
1,955,926 + -0.6
1,955,933 - +1.3
1,955,934 - -1.1
1,955,951 + -0.5
1,955,980 + -0.3
1,956,056 - DvMF_1587 0.12 -0.3
1,956,171 - DvMF_1587 0.23 -1.6
1,956,270 + DvMF_1587 0.32 -0.9
1,956,270 + DvMF_1587 0.32 -2.0
1,956,490 + DvMF_1587 0.52 -0.8

Or see this region's nucleotide sequence