Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1563

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1562 and DvMF_1563 are separated by 63 nucleotidesDvMF_1563 and DvMF_1564 are separated by 0 nucleotides DvMF_1562: DvMF_1562 - Radical SAM domain protein (RefSeq), at 1,926,567 to 1,927,772 _1562 DvMF_1563: DvMF_1563 - uracil-DNA glycosylase (RefSeq), at 1,927,836 to 1,929,035 _1563 DvMF_1564: DvMF_1564 - aminotransferase class I and II (RefSeq), at 1,929,036 to 1,930,238 _1564 Position (kb) 1927 1928 1929 1930Strain fitness (log2 ratio) -2 -1 0 1at 1927.982 kb on + strand, within DvMF_1563at 1928.390 kb on - strand, within DvMF_1563at 1928.429 kb on + strand, within DvMF_1563at 1928.627 kb on - strand, within DvMF_1563at 1928.724 kb on - strand, within DvMF_1563at 1928.724 kb on - strand, within DvMF_1563at 1929.091 kb on - strandat 1929.278 kb on - strand, within DvMF_1564at 1929.553 kb on + strand, within DvMF_1564at 1929.643 kb on + strand, within DvMF_1564at 1929.672 kb on + strand, within DvMF_1564

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
remove
1,927,982 + DvMF_1563 0.12 -0.1
1,928,390 - DvMF_1563 0.46 -0.3
1,928,429 + DvMF_1563 0.49 +0.3
1,928,627 - DvMF_1563 0.66 -0.9
1,928,724 - DvMF_1563 0.74 +0.3
1,928,724 - DvMF_1563 0.74 -1.1
1,929,091 - -0.9
1,929,278 - DvMF_1564 0.20 -0.8
1,929,553 + DvMF_1564 0.43 -0.6
1,929,643 + DvMF_1564 0.50 -2.0
1,929,672 + DvMF_1564 0.53 -0.4

Or see this region's nucleotide sequence