Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1478 and DvMF_1479 are separated by 103 nucleotides DvMF_1479 and DvMF_1480 overlap by 1 nucleotides DvMF_1480 and DvMF_1481 overlap by 8 nucleotides
DvMF_1478: DvMF_1478 - Extracellular ligand-binding receptor (RefSeq), at 1,812,242 to 1,813,459
_1478
DvMF_1479: DvMF_1479 - transcriptional regulator, GntR family (RefSeq), at 1,813,563 to 1,814,333
_1479
DvMF_1480: DvMF_1480 - ABC transporter related (RefSeq), at 1,814,333 to 1,815,175
_1480
DvMF_1481: DvMF_1481 - ABC transporter related (RefSeq), at 1,815,168 to 1,815,947
_1481
Position (kb)
1813
1814
1815 Strain fitness (log2 ratio)
-2
-1
0
1 at 1812.762 kb on + strand, within DvMF_1478 at 1813.202 kb on + strand, within DvMF_1478 at 1813.205 kb on - strand, within DvMF_1478 at 1813.489 kb on - strand at 1813.635 kb on + strand at 1813.706 kb on - strand, within DvMF_1479 at 1813.812 kb on + strand, within DvMF_1479 at 1814.195 kb on + strand, within DvMF_1479 at 1814.314 kb on + strand at 1814.658 kb on - strand, within DvMF_1480 at 1814.708 kb on + strand, within DvMF_1480 at 1815.001 kb on - strand, within DvMF_1480 at 1815.039 kb on + strand, within DvMF_1480 at 1815.205 kb on - strand at 1815.218 kb on + strand at 1815.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 1,812,762 + DvMF_1478 0.43 -1.3 1,813,202 + DvMF_1478 0.79 -0.2 1,813,205 - DvMF_1478 0.79 -0.9 1,813,489 - -0.6 1,813,635 + -0.6 1,813,706 - DvMF_1479 0.19 -2.0 1,813,812 + DvMF_1479 0.32 -2.6 1,814,195 + DvMF_1479 0.82 -0.3 1,814,314 + -0.6 1,814,658 - DvMF_1480 0.39 -0.4 1,814,708 + DvMF_1480 0.44 -0.2 1,815,001 - DvMF_1480 0.79 -1.7 1,815,039 + DvMF_1480 0.84 -0.8 1,815,205 - -0.5 1,815,218 + -1.0 1,815,218 + -1.2
Or see this region's nucleotide sequence