Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1445

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntprfA and DvMF_1445 are separated by 228 nucleotidesDvMF_1445 and lpxC are separated by 249 nucleotides DvMF_1444: prfA - peptide chain release factor 1 (RefSeq), at 1,765,544 to 1,766,617 prfA DvMF_1445: DvMF_1445 - protein-(glutamine-N5) methyltransferase, release factor-specific (RefSeq), at 1,766,846 to 1,767,955 _1445 DvMF_1446: lpxC - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (RefSeq), at 1,768,205 to 1,769,155 lpxC Position (kb) 1766 1767 1768Strain fitness (log2 ratio) -3 -2 -1 0 1at 1766.741 kb on + strandat 1766.763 kb on + strandat 1766.790 kb on + strandat 1767.651 kb on + strand, within DvMF_1445at 1767.686 kb on + strand, within DvMF_1445at 1767.881 kb on + strandat 1767.920 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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1,766,741 + -1.1
1,766,763 + -2.0
1,766,790 + -0.2
1,767,651 + DvMF_1445 0.73 -2.3
1,767,686 + DvMF_1445 0.76 -2.7
1,767,881 + -2.9
1,767,920 - -0.9

Or see this region's nucleotide sequence