Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1369

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1368 and DvMF_1369 are separated by 472 nucleotidesDvMF_1369 and DvMF_1370 are separated by 10 nucleotidesDvMF_1370 and DvMF_1371 are separated by 495 nucleotides DvMF_1368: DvMF_1368 - glycoside hydrolase family 13 domain protein (RefSeq), at 1,676,884 to 1,677,198 _1368 DvMF_1369: DvMF_1369 - hypothetical protein (RefSeq), at 1,677,671 to 1,678,063 _1369 DvMF_1370: DvMF_1370 - DNA binding domain protein, excisionase family (RefSeq), at 1,678,074 to 1,678,358 _1370 DvMF_1371: DvMF_1371 - no description, at 1,678,854 to 1,678,958 _1371 Position (kb) 1677 1678 1679Strain fitness (log2 ratio) -3 -2 -1 0 1at 1676.685 kb on + strandat 1676.873 kb on - strandat 1676.959 kb on - strand, within DvMF_1368at 1677.115 kb on + strand, within DvMF_1368at 1677.562 kb on - strandat 1677.715 kb on + strand, within DvMF_1369at 1677.738 kb on - strand, within DvMF_1369at 1678.097 kb on + strandat 1678.248 kb on + strand, within DvMF_1370at 1678.311 kb on + strand, within DvMF_1370at 1678.337 kb on + strandat 1678.338 kb on + strandat 1678.345 kb on - strandat 1678.396 kb on + strandat 1678.446 kb on + strandat 1678.613 kb on + strandat 1678.616 kb on - strandat 1678.790 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
remove
1,676,685 + -0.7
1,676,873 - -1.6
1,676,959 - DvMF_1368 0.24 -0.7
1,677,115 + DvMF_1368 0.73 +0.1
1,677,562 - -0.1
1,677,715 + DvMF_1369 0.11 -1.0
1,677,738 - DvMF_1369 0.17 -2.8
1,678,097 + -0.2
1,678,248 + DvMF_1370 0.61 -1.6
1,678,311 + DvMF_1370 0.83 -0.1
1,678,337 + -0.1
1,678,338 + -0.0
1,678,345 - -3.6
1,678,396 + +0.4
1,678,446 + -0.2
1,678,613 + -1.0
1,678,616 - +0.2
1,678,790 + -2.2

Or see this region's nucleotide sequence