Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1257

Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1255 and DvMF_1256 are separated by 16 nucleotidesDvMF_1256 and DvMF_1257 are separated by 67 nucleotidesDvMF_1257 and DvMF_1258 are separated by 500 nucleotides DvMF_1255: DvMF_1255 - hypothetical protein (RefSeq), at 1,552,620 to 1,553,702 _1255 DvMF_1256: DvMF_1256 - hypothetical protein (RefSeq), at 1,553,719 to 1,553,817 _1256 DvMF_1257: DvMF_1257 - hypothetical protein (RefSeq), at 1,553,885 to 1,554,328 _1257 DvMF_1258: DvMF_1258 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 1,554,829 to 1,555,737 _1258 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -3 -2 -1 0 1at 1553.028 kb on - strand, within DvMF_1255at 1553.044 kb on + strand, within DvMF_1255at 1553.249 kb on - strand, within DvMF_1255at 1553.252 kb on + strand, within DvMF_1255at 1553.260 kb on - strand, within DvMF_1255at 1553.260 kb on - strand, within DvMF_1255at 1553.260 kb on - strand, within DvMF_1255at 1553.486 kb on + strand, within DvMF_1255at 1553.799 kb on + strand, within DvMF_1256at 1553.799 kb on + strand, within DvMF_1256at 1553.807 kb on - strand, within DvMF_1256at 1553.807 kb on - strand, within DvMF_1256at 1553.807 kb on - strand, within DvMF_1256at 1553.807 kb on - strand, within DvMF_1256at 1554.138 kb on + strand, within DvMF_1257at 1554.354 kb on + strandat 1554.362 kb on - strandat 1554.362 kb on - strandat 1554.749 kb on + strandat 1554.783 kb on + strandat 1554.834 kb on - strandat 1554.872 kb on + strandat 1554.872 kb on + strandat 1554.880 kb on - strandat 1554.984 kb on + strand, within DvMF_1258at 1555.074 kb on + strand, within DvMF_1258

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 %
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1,553,028 - DvMF_1255 0.38 -0.4
1,553,044 + DvMF_1255 0.39 +0.7
1,553,249 - DvMF_1255 0.58 -1.2
1,553,252 + DvMF_1255 0.58 -0.2
1,553,260 - DvMF_1255 0.59 -0.6
1,553,260 - DvMF_1255 0.59 +0.2
1,553,260 - DvMF_1255 0.59 -1.4
1,553,486 + DvMF_1255 0.80 -0.7
1,553,799 + DvMF_1256 0.81 -0.5
1,553,799 + DvMF_1256 0.81 -1.2
1,553,807 - DvMF_1256 0.89 -0.2
1,553,807 - DvMF_1256 0.89 -0.4
1,553,807 - DvMF_1256 0.89 +0.3
1,553,807 - DvMF_1256 0.89 -1.7
1,554,138 + DvMF_1257 0.57 -3.1
1,554,354 + +0.3
1,554,362 - +1.0
1,554,362 - -1.3
1,554,749 + -1.3
1,554,783 + -0.2
1,554,834 - -0.4
1,554,872 + -0.6
1,554,872 + -0.8
1,554,880 - -1.2
1,554,984 + DvMF_1258 0.17 -1.1
1,555,074 + DvMF_1258 0.27 +0.5

Or see this region's nucleotide sequence