Experiment: MoYLS4 with 2-Furfuraldehyde 0.0625 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1174 and DvMF_1175 overlap by 4 nucleotides DvMF_1175 and DvMF_1176 overlap by 4 nucleotides DvMF_1176 and DvMF_1177 overlap by 20 nucleotides
DvMF_1174: DvMF_1174 - cobalamin (vitamin B12) biosynthesis CbiD protein (RefSeq), at 1,450,710 to 1,452,059
_1174
DvMF_1175: DvMF_1175 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit (RefSeq), at 1,452,056 to 1,453,480
_1175
DvMF_1176: DvMF_1176 - extracellular solute-binding protein family 3 (RefSeq), at 1,453,477 to 1,454,415
_1176
DvMF_1177: DvMF_1177 - precorrin-4 C11-methyltransferase (RefSeq), at 1,454,396 to 1,455,313
_1177
Position (kb)
1452
1453
1454 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1451.337 kb on - strand, within DvMF_1174 at 1451.614 kb on + strand, within DvMF_1174 at 1451.646 kb on - strand, within DvMF_1174 at 1451.717 kb on - strand, within DvMF_1174 at 1451.907 kb on - strand, within DvMF_1174 at 1453.053 kb on + strand, within DvMF_1175 at 1453.216 kb on - strand, within DvMF_1175 at 1453.300 kb on - strand, within DvMF_1175 at 1453.682 kb on + strand, within DvMF_1176 at 1453.825 kb on + strand, within DvMF_1176 at 1453.838 kb on + strand, within DvMF_1176 at 1453.862 kb on + strand, within DvMF_1176 at 1453.890 kb on - strand, within DvMF_1176 at 1454.106 kb on - strand, within DvMF_1176 at 1454.148 kb on - strand, within DvMF_1176 at 1454.251 kb on + strand, within DvMF_1176 at 1454.287 kb on - strand, within DvMF_1176 at 1454.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with 2-Furfuraldehyde 0.0625 % remove 1,451,337 - DvMF_1174 0.46 -3.3 1,451,614 + DvMF_1174 0.67 -2.9 1,451,646 - DvMF_1174 0.69 -2.0 1,451,717 - DvMF_1174 0.75 -2.3 1,451,907 - DvMF_1174 0.89 -1.4 1,453,053 + DvMF_1175 0.70 -2.8 1,453,216 - DvMF_1175 0.81 -0.7 1,453,300 - DvMF_1175 0.87 +0.3 1,453,682 + DvMF_1176 0.22 -0.3 1,453,825 + DvMF_1176 0.37 +0.3 1,453,838 + DvMF_1176 0.38 +0.0 1,453,862 + DvMF_1176 0.41 -2.1 1,453,890 - DvMF_1176 0.44 -1.4 1,454,106 - DvMF_1176 0.67 -0.0 1,454,148 - DvMF_1176 0.71 -0.4 1,454,251 + DvMF_1176 0.82 -1.4 1,454,287 - DvMF_1176 0.86 -0.4 1,454,388 + +0.6
Or see this region's nucleotide sequence